Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M03
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.69 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.2  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   6.4  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -2

Query: 391 FLKSLAWVETQICVDPVFHPHYQHYVREARIKAYVQLLRAYRSLSLDNIADTFGV 227
           +LK  +W+     VDP++  H Q           + L R +R+L L  +   +G+
Sbjct: 315 WLKDPSWLVNAFNVDPLYLKHEQQGAAPDYRHWQIPLGRRFRALKLWFVLRLYGI 369


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 393 SAYLHSCRDSTSSLNSGKRERRACTAAPCLRRADCR 500
           ++Y+ +C+   +  N   R    C ++PCL  A C+
Sbjct: 43  NSYICTCKPGFTGSNCQNRIN-LCDSSPCLNGATCQ 77


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 460 ALRSRFPELRELVESLHECRYADFL 386
           AL++RF EL++ ++    CRY   L
Sbjct: 185 ALKNRFKELQKYLKIETSCRYVGTL 209


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 349 DPVFHPHYQHYVRE 308
           DP FH  Y HY  E
Sbjct: 437 DPAFHNQYAHYPAE 450


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 628 DYSHAAELFIDCVSTFESYELVDFGTIIQYCVLACALAL 512
           DY     LF+ C+  F S  ++    ++ YCVL   L +
Sbjct: 200 DYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCI 238


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 349 DPVFHPHYQHYVREARIKAYVQLLRAYRS-LSLDNIADTFGVTREFI 212
           DP ++P+Y  Y++ A +   +Q     R+ L    +A      R+FI
Sbjct: 35  DPWYNPYYYQYLQNAALYHKLQFRGPPRTPLQPKLVAGKLKPKRQFI 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,531
Number of Sequences: 336
Number of extensions: 3376
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)