Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_M03
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 169 5e-43
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 33 0.035
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 30 0.43
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 28 1.8
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 4.0
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 27 4.0
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 4.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 5.4
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.4
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 26 7.1
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 26 7.1
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 26 7.1
SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha... 26 7.1
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 7.1
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 9.4
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 169 bits (410), Expect = 5e-43
Identities = 83/242 (34%), Positives = 152/242 (62%), Gaps = 3/242 (1%)
Frame = -2
Query: 787 IFALFRIXYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAE 608
+F+ R+ Y + +++ +G+ + K L++KGGDW +N+LKAY+ IY +++R++S AA+
Sbjct: 152 LFSKIRLAYVYA-DMRVVGQLLEKLKPLIEKGGDWERKNRLKAYQGIYLMSIRNFSGAAD 210
Query: 607 LFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQSAL--RRQGAAVQALRSRFPEL 434
L +DC+STF S EL+ + +++Y V++ A++L+R +++ + + AV L
Sbjct: 211 LLLDCMSTFSSTELLPYYDVVRYAVISGAISLDRVDVKTKIVDSPEVLAVLPQNESMSSL 270
Query: 433 RELVESLHECRYADFLKSLAWVE-TQICVDPVFHPHYQHYVREARIKAYVQLLRAYRSLS 257
+ SL+ C Y+ F ++LA VE + D HY++YVRE R +AY QLL +YR+LS
Sbjct: 271 EACINSLYLCDYSGFFRTLADVEVNHLKCDQFLVAHYRYYVREMRRRAYAQLLESYRALS 330
Query: 256 LDNIADTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQATIR 77
+D++A +FGV+ ++I+ ++++F +L C ID V G V T ++++ YQ ++
Sbjct: 331 IDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFT----NRPDEKNRQYQEVVK 386
Query: 76 RG 71
+G
Sbjct: 387 QG 388
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 33.5 bits (73), Expect = 0.035
Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Frame = -2
Query: 490 ALRRQGAAVQALRSRFPELRELVESLHECR-YADFLKSLAWVETQICVDPVFHPHYQHYV 314
A+R G ++A+R+ + HE R ADF K+L + ++ DP+ H
Sbjct: 274 AIRYAGRDIEAMRA--------IAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLY 325
Query: 313 REARIKAYVQLLRAYRSLSLDNIADTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCVV 137
+ ++++ + + + +IA+ G++ +E ++S +D +GC++
Sbjct: 326 DNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLI 384
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/76 (17%), Positives = 36/76 (47%)
Frame = +2
Query: 194 SRNLLFYELPGDTKRVSNIIQAERSVGAQQLNICLDASLAHIVLIMRVKYWVYADLSFHP 373
+R L+ + + + + + +++ + + + C +L H + R+ +V ++ ++H
Sbjct: 730 NRELIQFSMADNIRSIPSVVDGLKPGQRKVVYYCFKRNLVHETKVSRLAGYVASETAYHH 789
Query: 374 SKAFQEISISTLMQRF 421
+ E +I L Q F
Sbjct: 790 GEVSMEQTIVNLAQNF 805
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 27.9 bits (59), Expect = 1.8
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
Frame = -2
Query: 544 QYCVLACALALERHALQSALRRQGAAVQA-LRSRFPELRELVESLHECRYADFLKSLAWV 368
++C C+ +H S Q Q L + P L +LVE LH C F+ L
Sbjct: 766 RFCEATCS---NKHIHPSEFEGQKNLWQVILPNVVPNLLKLVEQLHCCYEPSFISGLGMH 822
Query: 367 ETQICVDPVFHPHYQHYVREARIKAYVQLLRAYR-SLSLDNIADTFG----VTREFIEEE 203
+ I + + H V + +++ +Y+ +S + + +FG RE+
Sbjct: 823 NSSILQKSIVERFWLHGVSQISKNQFLE--ESYKMDVSANKLIHSFGHFLRRLREYCYYA 880
Query: 202 ISTFTAAGR 176
I++F G+
Sbjct: 881 IASFMRLGQ 889
>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = -2
Query: 757 HGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDCVSTF 581
H C V ++ K ELV K W++ +++ A C +D++ +++ F
Sbjct: 76 HSCGVNDVTDLGGKDDELVGKRKKWKTEVRIETSMA-ECNGGKDFTEMTRIYLSIRKNF 133
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 739 EMGKAINKAHELVDKGGDWRSRNKLKAYEAIY 644
+ K I K HE + GGDWR + L A + Y
Sbjct: 269 DASKRIFKEHESMCYGGDWRHTDGLLATCSFY 300
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 646 YCLAVRDYSHAAELFIDCVSTFESYE 569
Y LA + S AA L+ CV FES E
Sbjct: 204 YSLAAKIASSAATLYDSCVHAFESME 229
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/61 (19%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 218 LPGDTKRVSNIIQAERSVG---AQQLNICLDASLAHIVLIMRVKYWVYADLSFHPSKAFQ 388
L GD ++ + ++++ +Q L + + + ++ + ++ ++Y ++ D+S PSK F
Sbjct: 1401 LVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFY 1460
Query: 389 E 391
+
Sbjct: 1461 D 1461
>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 663 KHMKLYIALLLEITVMQLNYSLTVCQLLNLMNWLISVQSSSTVFSLVP 520
KH +++ L + + L +SLT LL L++ + S + L+P
Sbjct: 53 KHQSVFLKFSLIVLLFSLMFSLTFGSLLGLISLALGFPSVGYRYVLLP 100
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 387 KKSAYLHSCRDSTSSLNSGKRERRACT 467
KKSA S DST SGKR R + T
Sbjct: 84 KKSASSTSKHDSTGVKTSGKRSRESST 110
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 645 IALLLEITVMQLNYSLTVCQLLNLMNWLISVQSSSTVF 532
+ALL+ M L Y + Q + +W++S+ T+F
Sbjct: 410 VALLILFLFMFLGYLVETGQYDTVFDWMLSISGLGTLF 447
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 349 DPVFHPHYQHYVREAR 302
DP +HP+YQH + EAR
Sbjct: 80 DP-YHPYYQHKLTEAR 94
>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 379 GFSRNQHIYTHAEIQLALLTLGNESVELVLQHLACVEQIVEHAF 510
G+S + T ++L+LL G + V++ ++ A VEQI + F
Sbjct: 61 GYSPSNDRRTVVILKLSLLVDGRDPVDVNMEDAASVEQIRKKGF 104
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 167 TLKTAGRRESRNLLFYELPGDTKRVSNIIQ 256
+L+ R+S++ + PG TKR+S I++
Sbjct: 164 SLRNVALRKSKSAIVGNYPGVTKRISEIVR 193
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.4 bits (53), Expect = 9.4
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -2
Query: 373 WVETQICVDPVFHPHYQHYV 314
W+ETQ+ + F PH+ ++
Sbjct: 872 WIETQVLLLATFAPHWSEHI 891
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,298
Number of Sequences: 5004
Number of extensions: 57460
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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