Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_M03
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0296 + 24216284-24216428,24216631-24216745,24217321-242174... 188 3e-48
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839... 186 2e-47
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91... 65 7e-11
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 34 0.15
04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554 33 0.26
11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876 31 0.79
10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179 31 0.79
01_06_1065 - 34238812-34239307,34239583-34240154,34241687-342419... 31 0.79
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 30 2.4
03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032 30 2.4
11_06_0769 + 27156153-27156313,27156593-27156611 29 3.2
04_03_0567 + 17217581-17217741,17218020-17218047 29 3.2
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 4.2
11_06_0583 + 25213680-25213827,25213920-25214335 29 5.6
08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571 29 5.6
10_08_0621 + 19328357-19329545,19329967-19329986 28 9.7
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581... 28 9.7
>04_04_0296 +
24216284-24216428,24216631-24216745,24217321-24217411,
24217495-24217640,24217745-24217964,24218037-24218145,
24218273-24218441,24218546-24218720
Length = 389
Score = 188 bits (459), Expect = 3e-48
Identities = 94/241 (39%), Positives = 152/241 (63%)
Frame = -2
Query: 787 IFALFRIXYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAE 608
+F +I +F+ + + K+I+KA +L ++GGDW +N+LK YE +YC+A R++ AA
Sbjct: 141 VFHTLQIGFFY-MDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAAS 199
Query: 607 LFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQSALRRQGAAVQALRSRFPELRE 428
LF+D +STF +YEL + T I Y VL ++L+R +L++ + + A+ + P L E
Sbjct: 200 LFLDSISTFTTYELFPYDTFIFYTVLTSVISLDRVSLKAKVV-DAPEILAVIGKVPHLSE 258
Query: 427 LVESLHECRYADFLKSLAWVETQICVDPVFHPHYQHYVREARIKAYVQLLRAYRSLSLDN 248
+ SL+ C+Y F + + + QI +D PH+++Y+RE R Y Q L +Y+S++++
Sbjct: 259 FLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEA 318
Query: 247 IADTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQATIRRGR 68
+A FGVT +FI+ E+S F AAG+L C+ID VA CV+ DA R+ YQATI++G
Sbjct: 319 MASAFGVTVDFIDLELSRFIAAGKLHCKIDKVA-CVL--ETNRPDA-RNAFYQATIKQGD 374
Query: 67 F 65
F
Sbjct: 375 F 375
>02_04_0498 +
23480930-23481186,23483615-23483705,23483790-23483935,
23484029-23484248,23484314-23484422,23484518-23484686,
23484801-23484975
Length = 388
Score = 186 bits (453), Expect = 2e-47
Identities = 92/241 (38%), Positives = 148/241 (61%)
Frame = -2
Query: 787 IFALFRIXYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAE 608
+F +I FH + + K+I+KA L ++GGDW +N+LK YE +Y +A R++ AA
Sbjct: 140 VFYTLQIGLFH-MDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYFMATRNFKKAAS 198
Query: 607 LFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQSALRRQGAAVQALRSRFPELRE 428
LF+D +STF +YEL + T + Y V+ + L+R +L+ + + A+ + P L E
Sbjct: 199 LFLDSISTFTTYELFPYDTFVFYTVITSIITLDRVSLKQKVV-DAPEILAVIGKVPHLSE 257
Query: 427 LVESLHECRYADFLKSLAWVETQICVDPVFHPHYQHYVREARIKAYVQLLRAYRSLSLDN 248
+ SL+ C+Y F + + + QI +D PH+++Y+RE R Y Q L +Y+S++++
Sbjct: 258 FLNSLYNCQYKSFFVAFSGMTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEA 317
Query: 247 IADTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQATIRRGR 68
+A FGVT +FI++E+S F AAG+L C+ID VAG + T DA R+ YQATI++G
Sbjct: 318 MAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNR---PDA-RNAFYQATIKQGD 373
Query: 67 F 65
F
Sbjct: 374 F 374
>03_01_0115 -
915142-915321,915397-915631,916301-916386,916474-916590,
917271-917591,918386-918772
Length = 441
Score = 64.9 bits (151), Expect = 7e-11
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Frame = -2
Query: 670 KLKAYEAIYCLAVRDYSHAAELFIDCVSTF-ESY-ELVDFGTIIQYCVLACALALERHAL 497
KL+A + LA + Y AA F++ +Y E++ + Y L + +R L
Sbjct: 215 KLRAAAGLAYLATKKYKLAARKFVETGHELGNNYSEVIAPQDVAVYGALCALASFDRSDL 274
Query: 496 QSALRRQGAAVQALRSRFPELRELVESLHECRYADFLKSLAWVETQICVDPVFHPHYQHY 317
+S + + + PE+RELV + RY L+ L ++T + +D H H +
Sbjct: 275 KSKVI-DNSNFRNFLELVPEVRELVNDFYSSRYGSCLEHLEKLKTNLLLDIHLHDHVETL 333
Query: 316 VREARIKAYVQLLRAYRSLSLDNIADTFGVTREFIEEEISTFTAAGRLQCRIDA 155
+ R KA +Q + S+ L+ +A F + +E+E++ ++Q RID+
Sbjct: 334 YMDIRHKAIIQYTLPFISVDLNTMAAAFMTSVSMLEKELAALITENKIQARIDS 387
>03_01_0052 -
450258-450285,450345-450457,450540-450746,451021-451080,
451281-451376,451495-451551,451786-451845,452774-452853,
454265-454367,454530-454571
Length = 281
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 606 YSLTVCQLLNLMNWLISVQSSSTVFSLVPWPLKGMLYNLLYAGKVLQYKL 457
YS + Q + +N I +SS + L P K ++YNL Y +L Y L
Sbjct: 38 YSTNMTQAMGAVNSCIPSLTSSDILELTSVPFKNIVYNLAYMFWILGYSL 87
>04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554
Length = 513
Score = 33.1 bits (72), Expect = 0.26
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +3
Query: 81 IVAWYSCDRSASAPRPAPVTTQPATASIRH*RRPAAVKVEISSSMNSLVTPN 236
+ A C RSA A P V A AS R R AAV E SSS+ ++ TP+
Sbjct: 336 VEALSGCIRSAEAQSPEGVNRHLAGASTRVATRCAAVLREASSSVAAMTTPS 387
>11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876
Length = 528
Score = 31.5 bits (68), Expect = 0.79
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 48 VPG*GVNRPRRIVAWYSCDRS--ASAPRPAPVTTQPATASIRH*RRPAAVKVEISSSMNS 221
V G P+ V W + D + A+A RP P T P A +RPAA SS
Sbjct: 372 VAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKK 431
Query: 222 LVTPNVSAILSKLRD 266
+ + L ++ D
Sbjct: 432 SRSDSAGLALERIAD 446
>10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179
Length = 404
Score = 31.5 bits (68), Expect = 0.79
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 48 VPG*GVNRPRRIVAWYSCDRS--ASAPRPAPVTTQPATASIRH*RRPAAVKVEISSSMNS 221
V G P+ V W + D + A+A RP P T P A +RPAA SS
Sbjct: 248 VAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKK 307
Query: 222 LVTPNVSAILSKLRD 266
+ + L ++ D
Sbjct: 308 SRSDSAGLALERIAD 322
>01_06_1065 -
34238812-34239307,34239583-34240154,34241687-34241998,
34242060-34242386
Length = 568
Score = 31.5 bits (68), Expect = 0.79
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 48 VPG*GVNRPRRIVAWYSCDRS--ASAPRPAPVTTQPATASIRH*RRPAAVKVEISSSMNS 221
V G P+ V W + D + A+A RP P T P A +RPAA SS
Sbjct: 248 VAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKK 307
Query: 222 LVTPNVSAILSKLRD 266
+ + L ++ D
Sbjct: 308 SRSDSAGLALERIAD 322
>11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 463 QALRSRFPELRELVESLHE 407
Q L S FPELR+L+E +HE
Sbjct: 1080 QVLVSLFPELRQLIEDIHE 1098
>03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032
Length = 429
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 72 PRRIVAWYSCDRS--ASAPRPAPVTTQPATASIRH*RRPAAVKVEISSSMNSLVTPNVSA 245
P+ V W + D + A+A RP P T P A +RPAA SS + +
Sbjct: 352 PQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTPASGSSSKKSRSDSAGL 411
Query: 246 ILSKLRD 266
L ++ D
Sbjct: 412 ALERIAD 418
>11_06_0769 + 27156153-27156313,27156593-27156611
Length = 59
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 187 AAGRLQCRIDAVAGCVVTGAGR-GADADRSQLYQATIRRGR 68
AA L C + G ++ A R G+D +RS L A +RR R
Sbjct: 6 AAALLACGVLGAIGGILMAANRFGSDRERSPLAAAAVRRAR 46
>04_03_0567 + 17217581-17217741,17218020-17218047
Length = 62
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 187 AAGRLQCRIDAVAGCVVTGAGR-GADADRSQLYQATIRRGR 68
AA L C + G ++ A R G+D +RS L A +RR R
Sbjct: 6 AAALLACGVLGAIGGILMAANRFGSDRERSPLAAAAVRRAR 46
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Frame = +3
Query: 96 SCDRSASAPRPAPVTTQPATASIR--------H*RRPAAVKVEISSSMNSLVTP 233
S SAS PRP P TT A A+ H RRPAA +++S SL P
Sbjct: 455 SATSSASRPRPPPTTTTAAAANGHLAASQPQPHRRRPAAT-ATVATSSASLPAP 507
>11_06_0583 + 25213680-25213827,25213920-25214335
Length = 187
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 322 ADNEGEILGLRRFEFPPKQGFSRNQHIYTHAEIQLALLTLGNESVELVLQHLACVEQIVE 501
A + E + L PPK S+N I H +I+ +L L H+A +E++ +
Sbjct: 125 AAGDNEAIALSTVVMPPK--ISKNTKILRHVQIK------DGPEAQLQLSHVASLERLRK 176
Query: 502 HAFQGPRHKR 531
GPR +R
Sbjct: 177 LGVLGPRLQR 186
>08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571
Length = 340
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/87 (25%), Positives = 38/87 (43%)
Frame = -2
Query: 550 IIQYCVLACALALERHALQSALRRQGAAVQALRSRFPELRELVESLHECRYADFLKSLAW 371
++ Y V + L+ L + G ++ L +R P L E +E H ADF K +
Sbjct: 104 LLDYIVSRASSTLKSIRLIACTFVWGQSLATLAARCPLLEE-IECSHHKMSADFFKYVGI 162
Query: 370 VETQICVDPVFHPHYQHYVREARIKAY 290
V Q+ V P++ + E +K +
Sbjct: 163 VRPQLKRLRVHMPYFDYDAMEDEMKEH 189
>10_08_0621 + 19328357-19329545,19329967-19329986
Length = 402
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 567 WLISVQSSSTVFSLVPWPLKGMLYNLLYAGKVL 469
WL+ + ++VF +PW K + L AG L
Sbjct: 91 WLLYISKKTSVFFFLPWITKHLFRGRLEAGHAL 123
>10_02_0145 -
5817684-5817751,5817850-5817955,5818145-5818222,
5818334-5818380,5818476-5818557,5818688-5818829,
5819027-5819142,5819244-5819318,5819413-5819531,
5820569-5820636,5820739-5820803,5820887-5820968,
5821462-5821514,5821589-5821711,5821986-5822054,
5822581-5822649,5822735-5822786,5823423-5823475,
5823562-5823654,5823762-5823806,5824616-5824777
Length = 588
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 108 SASAPRPAPVTTQPATASIRH*RRPAAVKVEISSS 212
SA+A RPAP+ +P + R RR + V SSS
Sbjct: 14 SAAAARPAPLAARPGGGARRVHRRHSLAVVRCSSS 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,709,647
Number of Sequences: 37544
Number of extensions: 407955
Number of successful extensions: 1476
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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