Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_M03
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical pr... 163 1e-40
AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical ... 40 0.002
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 37 0.014
CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical... 33 0.31
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 29 3.8
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 29 3.8
AC006730-2|AAK72091.1| 322|Caenorhabditis elegans Serpentine re... 29 3.8
Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical p... 28 6.6
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41996-7|AAA83476.1| 298|Caenorhabditis elegans Hypothetical pr... 28 8.8
AC024852-4|AAT81182.1| 794|Caenorhabditis elegans Conserved oli... 28 8.8
AB212858-1|BAE66673.1| 792|Caenorhabditis elegans COGC-3 protein. 28 8.8
>Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical
protein F49C12.8 protein.
Length = 410
Score = 163 bits (396), Expect = 1e-40
Identities = 91/245 (37%), Positives = 145/245 (59%), Gaps = 6/245 (2%)
Frame = -2
Query: 787 IFALFRIXYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAE 608
+FA+ R+ F + + K I KA EL+++GGDW +N+L++YEA+Y ++VRD++ AA+
Sbjct: 155 VFAMIRVGLFF-LDHHLINKFITKAKELMEQGGDWERKNRLRSYEALYRMSVRDFAGAAD 213
Query: 607 LFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQSALRRQGAAVQ-----ALRSRF 443
LF++ V TF SYEL+ + +I Y V+ AL+R L++ + R + L
Sbjct: 214 LFLEAVPTFGSYELMTYENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTGGGLNGTL 273
Query: 442 PELRELVESLHECRYADFLKSLAWVETQ-ICVDPVFHPHYQHYVREARIKAYVQLLRAYR 266
+RE +ES ++C Y F LA +E++ D PH+ +Y R R +AY Q L Y+
Sbjct: 274 IPVREYLESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYEQFLTPYK 333
Query: 265 SLSLDNIADTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQA 86
++ +D +A FGV+R FI+ E+ A G+LQCRIDAV G V+ R + ++ LY+A
Sbjct: 334 TVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNG-VIEVNHRDS---KNHLYKA 389
Query: 85 TIRRG 71
I+ G
Sbjct: 390 VIKDG 394
>AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical
protein Y59A8A.1 protein.
Length = 601
Score = 40.3 bits (90), Expect = 0.002
Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 1/178 (0%)
Frame = -2
Query: 670 KLKAYEAIYCLAVRDYSHAAELFIDC-VSTFESYELVDFGTIIQYCVLACALALERHALQ 494
K A + + L + YS E + +S V + Y +L+ + R L+
Sbjct: 317 KCLAAQVLLKLRNKRYSQVVETILQIKTECLQSKWFVTSSDLGIYGMLSAMATMSRADLK 376
Query: 493 SALRRQGAAVQALRSRFPELRELVESLHECRYADFLKSLAWVETQICVDPVFHPHYQHYV 314
+ G + L S P+L EL+ S R+ + + V+ ++ +DP +
Sbjct: 377 LQVSGNGTFRKLLESE-PQLIELLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELF 435
Query: 313 REARIKAYVQLLRAYRSLSLDNIADTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCV 140
+ R K +Q L+ Y ++ + +A+ G++ ++ + + +ID G V
Sbjct: 436 EKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIV 493
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 37.1 bits (82), Expect = 0.014
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 69 RPRRIVAWYSCDRSASAPRPAPVTTQPATASIRH*RRPAAVKVEISSSMNSLVTPNVSAI 248
RP ++A S S PRP+P T P A+IR + AV + + +S+VTP+ S
Sbjct: 625 RPASVIAPSSSVVPKSQPRPSPTTRPPTRATIRPTPQNKAVTSRPAPATSSVVTPSPSQS 684
Query: 249 LSK 257
L++
Sbjct: 685 LTQ 687
>CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical
protein C42C1.15 protein.
Length = 312
Score = 32.7 bits (71), Expect = 0.31
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -2
Query: 508 RHALQSALRRQ--GAAVQALRSRFPELRELVESLHECRYADFLKSLAWVETQICVDPVFH 335
++ALQ L + G VQA+R P++ E + +E A+ K L ETQ V+ +
Sbjct: 147 KNALQEDLVKMAPGLYVQAVRVTKPKIPEAIRLNYEKMEAEKTKLLVAQETQKVVEKLAE 206
Query: 334 PHYQHYVREARIKAYVQLLRAYRSLS 257
+ V EA A V L+ R LS
Sbjct: 207 TERKKAVIEAEKAAQVALIHQKRLLS 232
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3
Query: 156 ASIRH*RRPAAVKVEISSSMNSLVTPNVSAILSKLRD 266
ASI +A +E+ S NSLV PN AILSKL D
Sbjct: 548 ASIYESLEDSAQAIELYSQANSLV-PNDPAILSKLAD 583
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3
Query: 156 ASIRH*RRPAAVKVEISSSMNSLVTPNVSAILSKLRD 266
ASI +A +E+ S NSLV PN AILSKL D
Sbjct: 548 ASIYESLEDSAQAIELYSQANSLV-PNDPAILSKLAD 583
>AC006730-2|AAK72091.1| 322|Caenorhabditis elegans Serpentine
receptor, class i protein34 protein.
Length = 322
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 646 YCLAVRDYSHAAELFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQSALRRQ 476
YC V S + + + F+SY++V+F QY +LA ++ + LQ + Q
Sbjct: 14 YCYIVGAVSFVLNVLVILIIIFKSYKIVEF----QYMLLAFQISCTNYVLQLTILSQ 66
>Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical
protein T21C9.9 protein.
Length = 391
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 108 SASAPRPAPVTTQPATASIRH*RRPAAVKVEISSSMNSLVTPN 236
S APRPAP QP R +PAA E++ + + + N
Sbjct: 110 SRPAPRPAPAPYQPPRVQERPYVQPAAPVAELAETRKNTLHDN 152
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 102 DRSASAPRPAPVTTQPAT 155
D S P+PAPVT PAT
Sbjct: 2299 DMDTSTPKPAPVTRSPAT 2316
>U41996-7|AAA83476.1| 298|Caenorhabditis elegans Hypothetical
protein F38E1.10 protein.
Length = 298
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 392 FLEKPCLGGNSNLRRPSISPSLSALCAR 309
FL P + +L PS++PS S LC R
Sbjct: 7 FLSSPLVFAQLDLCEPSVNPSPSCLCTR 34
>AC024852-4|AAT81182.1| 794|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 3, isoform a
protein.
Length = 794
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 472 AAVQALRSRFPELRELVESLHECRYADFLK 383
A++ + RF + E E L EC+YA F K
Sbjct: 250 ASINVVEQRFSAVPEFEEMLAECQYAYFAK 279
>AB212858-1|BAE66673.1| 792|Caenorhabditis elegans COGC-3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 472 AAVQALRSRFPELRELVESLHECRYADFLK 383
A++ + RF + E E L EC+YA F K
Sbjct: 250 ASINVVEQRFSAVPEFEEMLAECQYAYFAK 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,391,893
Number of Sequences: 27780
Number of extensions: 327793
Number of successful extensions: 999
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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