Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L24
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         29   0.24 
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    29   0.32 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   1.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   3.9  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   5.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   5.2  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   5.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   6.8  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  

>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 295 YFVFLLYSIN-ILFFNGTRGHILLYTCLFRKGILCSSDY 182
           +F FL + +N ILFF      I LY+C FR  I+C   Y
Sbjct: 76  HFFFLFWLLNFILFFR-----IHLYSCNFRMSIICEEYY 109


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 181 VYNIYWDISKAVFFFFFD*TPYLYTVFFFI 92
           +Y  Y   SK +  FF D T YL+   FFI
Sbjct: 431 IYKTYRSPSKEILAFFIDQTWYLFYALFFI 460


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 298 SYFVF-LLYSINILFFNGTRGHILLYTCLFR 209
           SYFVF LLYS  + F     GH+ L++C  +
Sbjct: 721 SYFVFALLYSF-LSFLQRPLGHLSLFSCFLQ 750


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 128 LNALPVYCFFFHKLSQN*IIAIRIVFYVTN 39
           LNAL   C FF K   N +I   ++ Y+ +
Sbjct: 613 LNALAPLCVFFGKAKSNDLILSHLITYLND 642


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 330 LYTNXTVFITWQHFYCDTF 386
           LYTN   ++TW++ + D F
Sbjct: 433 LYTNPKPYVTWRNAFFDEF 451


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 213 NKQVYNNI*PLVPLKNKIFIEYKR 284
           +KQV N I  LVP   K +I+YK+
Sbjct: 106 DKQVANRIFSLVPGPGKHYIKYKK 129


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 353 YNMATLLLRHILFTTD 400
           YN+ TLL+ HI  TTD
Sbjct: 374 YNLLTLLVTHIPITTD 389


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 10  DTK*SIQKALLVT*KTIRIAIIQFCDNL*KKKQYTGRAFNRKRKKKRLWKYPNRYY 177
           +TK +I  A L    T R+A++  C++   +  +    F    ++    +YP  YY
Sbjct: 456 NTKQAIVDAFLSKPLTHRVALVFHCEHSAHRAPHLALHFRNTDRRMNSHRYPFLYY 511


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 193 NTICLSEISKYIIIYDPLYR*RIKYLLNTKE 285
           N I LS I KY   +      RIK L+ T E
Sbjct: 249 NAIALSAIGKYTSEFSAFMEKRIKNLITTTE 279


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 103 FFFINCHKTELSQFVL 56
           F F+NC KT LS ++L
Sbjct: 165 FCFVNCFKTRLSNWML 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,688
Number of Sequences: 5004
Number of extensions: 38112
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)