Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L24
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    28   3.5  
M38251-1|AAA28059.1|  354|Caenorhabditis elegans G-o protein alp...    27   4.6  
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 308 VVIILLCFSFVFNKYFIL*RYKGSYIIIYLLISERHI 198
           +V+I L FSFV+    +     GS + +Y+L +E H+
Sbjct: 440 IVLIALWFSFVWGALAVAAGCAGSIVTVYVLYAEYHL 476


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 127 NRKRKKKRL-WKYPNRYYIHSRTNTICLSEISK 222
           NRK KKK+L +KYP+R  ++S    I  + I+K
Sbjct: 20  NRKLKKKKLTYKYPSRIKLNSSCAVIINTLINK 52


>M38251-1|AAA28059.1|  354|Caenorhabditis elegans G-o protein alpha
           subunit protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +1

Query: 145 KRLWKYPNRYYIHSRTNTICLSEISKYII-----IYDPLYR*RIKYLLNTKEKQSKIITT 309
           KRLW         SR+N   L++ +KY +     + + +Y+   +++L T+ K + I+  
Sbjct: 129 KRLWGDAGVQDCFSRSNEYQLNDSAKYFLDDLERLGEAIYQPTEQHILRTRVKTTGIVEV 188

Query: 310 HY 315
           H+
Sbjct: 189 HF 190


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 386 ECVAIKVLPCYKNRLVCIQ*XKXK*CVVIILLCFSFVFNKYFIL 255
           +C  + VLP    +L C        CVV++L+CF +    +F L
Sbjct: 84  DCFIMVVLPESVKQLYCTPRRAKITCVVLMLICFIYNIPHFFEL 127


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 253 NGTRGH--ILLYTCLFRKGILCSSDYVYNIYWDISKAVFFFFFD*T 122
           NGTR    +L+   LF   I C + + Y   W + ++V+FFF   T
Sbjct: 219 NGTRPIPLLLVLIVLFFWMIQCVAYFAYFENWTLFESVYFFFISMT 264


>Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical
           protein C33A12.10 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 59  IVFYVTNNAFCMLYLVS 9
           I+FY+TN AF ++Y+ S
Sbjct: 263 IIFYLTNGAFLLVYIFS 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,811,749
Number of Sequences: 27780
Number of extensions: 208238
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)