Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L24
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.65 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.65 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -3

Query: 262 LFFNGTRGHILLYTCLFRKGILCSSDYVYNIYWDISKAVFFFFFD*TP-YLYTVFFFIN 89
           LF++     I   T L+ K  +  + Y+Y++Y  +       F    P Y    +FF N
Sbjct: 114 LFYHAKDFDIFFKTALWAKNNINEAQYIYSLYTAVITRPDTKFIQLPPLYEMCPYFFFN 172


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -3

Query: 262 LFFNGTRGHILLYTCLFRKGILCSSDYVYNIYWDISKAVFFFFFD*TP-YLYTVFFFIN 89
           LF++     I   T L+ K  +  + Y+Y++Y  +       F    P Y    +FF N
Sbjct: 114 LFYHAKDFDIFFKTALWAKNNINEAQYIYSLYTAVITRPDTKFIQLPPLYEMCPYFFFN 172


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 199 ICLSEISKYIIIYDPLYR*RIKYLLNTKEKQ 291
           +CL     YII++ P    R K  +  K K+
Sbjct: 753 VCLYSPKIYIILFQPDKNIRRKVTMGDKSKK 783


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 199 ICLSEISKYIIIYDPLYR*RIKYLLNTKEKQ 291
           +CL     YII++ P    R K  +  K K+
Sbjct: 843 VCLYSPKIYIILFQPDKNIRRKVTMGDKSKK 873


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,665
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)