Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L23
         (514 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   230   7e-61
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   216   2e-56
U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.      29   2.8  
BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p pro...    29   2.8  
BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p pro...    29   2.8  
AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB...    29   2.8  
AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA...    29   2.8  
Z11527-1|CAA77616.1|  614|Drosophila melanogaster CYS3HIS finger...    29   3.7  
BT021256-1|AAX33404.1|  608|Drosophila melanogaster RE58038p pro...    29   3.7  
AE014297-3282|AAO41594.1|  599|Drosophila melanogaster CG4620-PB...    29   3.7  
AE014297-3281|AAO41593.1|  599|Drosophila melanogaster CG4620-PA...    29   3.7  
AE014134-438|AAO41161.1| 1283|Drosophila melanogaster CG33125-PA...    28   6.5  
BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p pro...    28   8.5  
AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p pro...    28   8.5  
AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA...    28   8.5  

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  230 bits (563), Expect = 7e-61
 Identities = 110/118 (93%), Positives = 114/118 (96%)
 Frame = -1

Query: 430 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 251
           MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60

Query: 250 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAIS 77
            VATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI+
Sbjct: 61  FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAIT 118



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 47  LWPRIASNASSIA 9
           LWPRIASNASSIA
Sbjct: 128 LWPRIASNASSIA 140


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  216 bits (527), Expect = 2e-56
 Identities = 104/118 (88%), Positives = 108/118 (91%)
 Frame = -1

Query: 430 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 251
           MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60

Query: 250 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAIS 77
            VATVKKGKPELRKKV      RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI+
Sbjct: 61  FVATVKKGKPELRKKVSVVPSARQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAIT 118



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 47  LWPRIASNASSIA 9
           LWPRIASNASSIA
Sbjct: 128 LWPRIASNASSIA 140


>U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.
          Length = 904

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 126 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 296
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842


>BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p
           protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 126 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 296
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 250 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 307


>BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p
           protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 126 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 296
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832


>AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB,
           isoform B protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 126 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 296
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832


>AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA,
           isoform A protein.
          Length = 904

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 126 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 296
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842


>Z11527-1|CAA77616.1|  614|Drosophila melanogaster CYS3HIS finger
           protein protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 184 RQRKPFRRRDGVFIYFEDN 128
           R+R+P R+RDG F Y  DN
Sbjct: 72  RRRRPVRKRDGTFNYSADN 90


>BT021256-1|AAX33404.1|  608|Drosophila melanogaster RE58038p
           protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 184 RQRKPFRRRDGVFIYFEDN 128
           R+R+P R+RDG F Y  DN
Sbjct: 66  RRRRPVRKRDGTFNYSADN 84


>AE014297-3282|AAO41594.1|  599|Drosophila melanogaster CG4620-PB,
           isoform B protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 184 RQRKPFRRRDGVFIYFEDN 128
           R+R+P R+RDG F Y  DN
Sbjct: 57  RRRRPVRKRDGTFNYSADN 75


>AE014297-3281|AAO41593.1|  599|Drosophila melanogaster CG4620-PA,
           isoform A protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 184 RQRKPFRRRDGVFIYFEDN 128
           R+R+P R+RDG F Y  DN
Sbjct: 57  RRRRPVRKRDGTFNYSADN 75


>AE014134-438|AAO41161.1| 1283|Drosophila melanogaster CG33125-PA
            protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 458  ISFKILIQQNV*ERTWWFRGSEIPYLPGSPSGSSNQLRRQHR--GKESVCDRCPRYQRSP 285
            I   I  Q++V +R      S+ P +PGS   SS  LR +HR   K S+  +   Y   P
Sbjct: 913  IQTSINSQEHVCKRKSIEASSKPPEMPGSIGSSSEYLRPRHRLVTKWSLTSQSKPYNSRP 972

Query: 284  E 282
            E
Sbjct: 973  E 973


>BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p protein.
          Length = 2016

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 246  TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 371
            TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 1011 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 1052


>AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p
           protein.
          Length = 1332

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 246 TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 371
           TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 327 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 368


>AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA
            protein.
          Length = 2016

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 246  TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 371
            TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 1011 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 1052


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,712,647
Number of Sequences: 53049
Number of extensions: 598871
Number of successful extensions: 2223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2223
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1867000320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)