Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L20
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    29   0.62 
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    27   1.9  

>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   ALNLHCNINYYLKSYS*PKEYSNYFIVSFI 92
           AL    +++YY+ S S PK++S YF  +FI
Sbjct: 199 ALMYRFDLHYYINSTSQPKKHSTYFRNTFI 228


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 557 ISDRSTSELIDMKTNSRSRQT 495
           ISDR TSE+I  + + R+RQT
Sbjct: 126 ISDRITSEIISFENDIRTRQT 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,627
Number of Sequences: 5004
Number of extensions: 48204
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)