Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_L20
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765... 41 0.001
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 41 0.001
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 40 0.001
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 29 2.6
06_03_0381 - 20106714-20107088,20107177-20107594,20107721-201079... 29 3.4
03_01_0211 - 1655687-1655736,1656898-1656934,1657062-1657138,165... 29 3.4
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 6.0
06_03_0126 + 16978566-16979104,16979279-16979365,16979481-169795... 28 7.9
>09_04_0658 +
19275129-19275363,19275453-19275544,19276440-19276509,
19276617-19276735,19277026-19277122,19277229-19277308,
19277443-19277637,19277727-19277810,19277931-19277991,
19278682-19278742,19279162-19279255,19279357-19279429,
19279834-19279916,19280008-19280154
Length = 496
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Frame = -3
Query: 675 EXRIILSNLFCTPAAVQAVVDHVPKMKILTSEL-------HPVAP--NHFGQKYFGTD 529
E RII NL P +Q V P++KI+TSE+ + V P +G +YFGTD
Sbjct: 438 EERIIFLNLISAPEGIQCVCKRFPRLKIVTSEIDTGLSEEYRVIPGLGEYGDRYFGTD 495
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = -3
Query: 675 EXRIILSNLFCTPAAVQAVVDHVPKMKILTSELH-------PVAPN--HFGQKYFGTD*Y 523
E II NL P V V P++KI+TSE+ V P FG +YFGTD Y
Sbjct: 413 ETNIIFLNLISAPQGVHVVSKRFPRVKIVTSEIEFGLNDDFRVIPGMGEFGDRYFGTDDY 472
Query: 522 EDELEV*TDQK 490
+ D+K
Sbjct: 473 QSSTPFFCDEK 483
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = -3
Query: 675 EXRIILSNLFCTPAAVQAVVDHVPKMKILTSELH-------PVAPN--HFGQKYFGTD*Y 523
E II NL P V V P++KI+TSE+ V P FG +YFGTD Y
Sbjct: 438 ETNIIFLNLISAPQGVHVVSKRFPRVKIVTSEIDFGLNDDFRVIPGMGEFGDRYFGTDDY 497
Query: 522 EDELEV*TDQK 490
+ D+K
Sbjct: 498 QSSTPFFCDEK 508
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Frame = -3
Query: 639 PAAVQAVVDHVPKMKILTSEL-------HPVAPN--HFGQKYFGTD 529
P V V P++KI+TSE+ + V P +G +YFGTD
Sbjct: 424 PEGVHCVCKRFPRLKIVTSEIETGLNEEYRVIPGLGEYGDRYFGTD 469
>06_03_0381 -
20106714-20107088,20107177-20107594,20107721-20107970,
20108109-20108169,20108346-20108422,20108557-20109007
Length = 543
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 465 QVLLGISNIFGLSRPRVRLHINQFRSTSVRNDLGPQDAAPKLIFS 599
+++L + N+ GLS V+ H+ +RS + ++ G + A +FS
Sbjct: 155 KLVLQMMNVRGLSIAHVKSHLQMYRSKKLDHESGHERGAISSVFS 199
>03_01_0211 -
1655687-1655736,1656898-1656934,1657062-1657138,
1657360-1657492
Length = 98
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 471 LLGISNIFGLSRPRVRLHINQFRSTSVRNDLGPQDAAPK 587
+L + + GL+ V+ H+ +R+ +RNDLG Q A P+
Sbjct: 51 VLQLMGVGGLTISHVKSHLQMYRN--MRNDLGMQAATPQ 87
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +3
Query: 546 SVRNDLGPQDAAPK---LIFSFWVRDRLQLVPL 635
SV +DLG DAAPK L +W+++ + +PL
Sbjct: 3317 SVEHDLGASDAAPKTLRLFVPYWIKN-ISSIPL 3348
>06_03_0126 +
16978566-16979104,16979279-16979365,16979481-16979537,
16979648-16979886,16981776-16981894,16982010-16982096,
16983898-16983971,16984483-16984547,16984581-16984961,
16985136-16985401
Length = 637
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 214 IIVCFSLWSSKSLVLARPVLFPNYLLDTK-FNAKAQNACFVFM 89
++VC +WS + +VL +L PN L+T + A FV+M
Sbjct: 177 LMVCLEMWSFELIVLLSGIL-PNPKLETSVLSISLNTAAFVWM 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,486
Number of Sequences: 37544
Number of extensions: 239171
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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