Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L20
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-3|CAB54198.1|  231|Caenorhabditis elegans Hypothetical pr...    37   0.015
Z99709-2|CAB16859.1|  307|Caenorhabditis elegans Hypothetical pr...    37   0.015
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    29   2.3  

>Z99709-3|CAB54198.1|  231|Caenorhabditis elegans Hypothetical
           protein C47B2.2b protein.
          Length = 231

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 675 EXRIILSNLFCTPAAVQAVVDHVPKMKILTSELHPVAPNHFGQKYFG 535
           +  I L +LF +P  ++ +    P + ++ S++  + PNHF   YFG
Sbjct: 183 DENIYLVSLFISPTGLKNITRKYPYITVVASDITSLYPNHFSTSYFG 229


>Z99709-2|CAB16859.1|  307|Caenorhabditis elegans Hypothetical
           protein C47B2.2a protein.
          Length = 307

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 675 EXRIILSNLFCTPAAVQAVVDHVPKMKILTSELHPVAPNHFGQKYFG 535
           +  I L +LF +P  ++ +    P + ++ S++  + PNHF   YFG
Sbjct: 259 DENIYLVSLFISPTGLKNITRKYPYITVVASDITSLYPNHFSTSYFG 305


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein
            F43C1.1 protein.
          Length = 1036

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 477  GISNIFGLSRPRVRLHINQFRSTSVRNDLGPQDAAPKL 590
            G SNI  L R + ++  N F ++S +N + P  A PK+
Sbjct: 888  GNSNILVLRRIKPQMTFNGFSTSSTKNQVTPDIAIPKI 925


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,984
Number of Sequences: 27780
Number of extensions: 262403
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)