Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L19
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z47070-4|CAA87342.1|  363|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical ...    29   4.5  

>Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical
           protein Y57G11C.6 protein.
          Length = 482

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 318 KSRVNYNPRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 461
           KS  +  PR    FC+ C+       F K+ VTK  +G  K    N Y
Sbjct: 407 KSIRSQRPRAVDSFCQYCSLYISLLYFIKKKVTKPAEGDKKSTPTNKY 454


>AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical
           protein Y18H1A.1 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 306 ASTKKSRVNYNPRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 461
           A   KS  +  PR    FC+ C+       F K+ VTK  +G  K   +N Y
Sbjct: 346 ADIVKSIRSQRPRAVDSFCQYCSLYISLLYFIKKKVTKPAEGDKKPTLSNKY 397


>Z47070-4|CAA87342.1|  363|Caenorhabditis elegans Hypothetical
           protein T09B9.5 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  KCTLLRTVQSKFPKCSFISKNLLLHYLGLLFIKL 113
           KC++L  V   +   S ++  +LLH  GL+FI L
Sbjct: 172 KCSILLAVSQSYLTFSLLTLLILLHATGLIFIML 205


>AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical
           protein C24D10.1 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 306 ASTKKSRVNYNPRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 461
           A   KS     PR    FC+ C+       F K+ VTK   G  K    N Y
Sbjct: 403 ADIVKSIRTQRPRAVDSFCQYCSLYISLLYFIKKKVTKPADGDKKSTPTNKY 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,512
Number of Sequences: 27780
Number of extensions: 275402
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)