Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L14
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   1.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   1.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   1.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.4  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -3

Query: 432 RYINEDFCKIISNSRQIVLESNY 364
           RYIN ++  ++SN  Q ++ +++
Sbjct: 371 RYINREYILVLSNKMQKMVNNDF 393


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -3

Query: 432 RYINEDFCKIISNSRQIVLESNY 364
           RYIN ++  ++SN  Q ++ +++
Sbjct: 371 RYINREYILVLSNKMQKMVNNDF 393


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -3

Query: 432 RYINEDFCKIISNSRQIVLESNY 364
           RYIN ++  ++SN  Q ++ +++
Sbjct: 371 RYINREYILVLSNKMQKMVNNDF 393


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 166 SNKYKEYHEHAMYSVQNISLLNSP 237
           +N YK Y++   Y++ NI  +  P
Sbjct: 326 NNNYKNYNKKLYYNIINIEQIPVP 349


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 429 YINEDFCKIISNSRQIVLESNYLKR 355
           Y   + CKI +N +Q++ ++  LKR
Sbjct: 3   YCTCEKCKITANRQQVMRQNMKLKR 27


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 312 KNRAKKSNISSKNQIASNNYFL 377
           KN     NIS K Q   N YFL
Sbjct: 107 KNDDNFRNISEKYQEIFNGYFL 128


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 242 IVGELRSEMFCTLYIAC 192
           +  E+ +EMFC   I C
Sbjct: 154 LASEVANEMFCETTIGC 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,463
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)