Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_L13
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0162 + 17858802-17861168 32 0.27
02_05_0796 + 31800256-31800528,31800635-31800758,31802642-318027... 31 0.63
01_06_1402 + 37052996-37053449,37053533-37053630,37053718-370538... 31 0.63
09_04_0180 + 15367737-15367755,15368874-15369739 29 1.9
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 2.5
01_07_0139 - 41385823-41386656 29 2.5
01_05_0490 + 22672241-22674679 29 2.5
11_06_0610 - 25449085-25453284 28 4.4
09_02_0113 + 4408171-4409415,4409902-4409907 28 4.4
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 4.4
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 28 4.4
09_06_0264 - 21929086-21931368 28 5.9
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 28 5.9
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 27 7.7
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 27 7.7
09_04_0430 + 17502387-17503505 27 7.7
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 27 7.7
07_03_1157 - 24419157-24419948 27 7.7
07_03_0089 - 13300902-13301645 27 7.7
06_03_1256 + 28787681-28788039,28788430-28788517 27 7.7
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 27 7.7
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 27 7.7
>03_04_0162 + 17858802-17861168
Length = 788
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 164 SDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPP 60
S G++ +PEA+L PT T + +S A PPP
Sbjct: 664 SCGKLDKNKIPEAQLNYPTITVPLPRSSSSAAPPP 698
>02_05_0796 +
31800256-31800528,31800635-31800758,31802642-31802771,
31804336-31804414,31804848-31805133,31805273-31805385
Length = 334
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -1
Query: 206 PHPECLHPPSFQCSSDG-EVGPQVVPEARLQLPTH--TAQVEEASPQATPPP 60
P P + P+ Q GP + P+ RLQLP H + Q +E + + PP
Sbjct: 253 PRPPFIQQPALQFDGGSFPPGPSLPPDFRLQLPPHALSRQPDETTGAQSAPP 304
>01_06_1402 +
37052996-37053449,37053533-37053630,37053718-37053888,
37054017-37054117,37054928-37055063,37055155-37055205,
37055311-37055598,37055896-37056130,37056408-37056523,
37057300-37057496,37057739-37057745
Length = 617
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 185 PPSFQCSSDGEVGPQVVPEARLQLPTHTAQVE-EASPQATPPPTVDPDRTK 36
P + SD E GP P + L P A EA PQ PPP P RT+
Sbjct: 60 PRPAEAPSDLESGPPARPNSALPPPPAAAAANAEAKPQPPPPP--PPARTR 108
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = -1
Query: 206 PHPECLHPPSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPPTVDPDRTKNCK 27
P P P D E+ P+ P + +PT + + P+ P P DP+ +
Sbjct: 109 PKPGLDPEPDTNVEPDLELEPEPPPPRPMPIPTPSPRPRPPDPEPKPDPEPDPELEPEPE 168
Query: 26 P 24
P
Sbjct: 169 P 169
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 43 RSGSTVGGGVACGDASSTCAVCVGNCSR 126
++G ++G GD S C+V VG C R
Sbjct: 71 KAGRSLGSASGGGDCSLVCSVLVGGCGR 98
>01_07_0139 - 41385823-41386656
Length = 277
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +1
Query: 43 RSGSTVGGGVACGDASSTCAVCVGNCSRASGTTCGPTSPSEEHWKEGGCRHSGWG 207
R S G C A++TC+ C+G C+ A G SP W+ G R S WG
Sbjct: 228 RGRSARGSPSWCRSAAATCSWCLG-CTSARGR----GSP----WRTSGRRPSWWG 273
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 125 RLQLPTHTAQVEEASPQATPPPTVDPDR 42
RL +VEE +P ATPPP P R
Sbjct: 446 RLDAVLEEMRVEEVAPAATPPPPARPRR 473
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = -1
Query: 206 PHPECLHPPSFQCSSDG----EVGPQVVPEARLQLPTHTAQVEEASPQATPPP 60
P PE PPS S E P P + P+H V + ++TPPP
Sbjct: 891 PPPEGKSPPSHTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPAKSTPPP 943
>09_02_0113 + 4408171-4409415,4409902-4409907
Length = 416
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 112 GNCS-RASGTTCGPTSPSEEHWKEGGCRHSGWGEVVFFFVFLNRPLRLFP 258
G CS RA G T + +W EG C H+ G++ + R L+L P
Sbjct: 217 GECSWRALPRDTGVTVAFDPYWFEGRCVHAA-GDIYWHICHSGRLLKLDP 265
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -1
Query: 203 HPECLHPPSFQCSSDGEVGPQV-VPEARLQLPTHTAQVEEASPQATPPPTVDPDRTKNCK 27
+P PP +GP++ +P + + EEA P PPP P + +
Sbjct: 158 NPSGAPPPGKPPMYKSSIGPRIPLPSSSAGASSSMPGTEEAGPSTLPPPPPPPPLPASSE 217
Query: 26 P 24
P
Sbjct: 218 P 218
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -1
Query: 200 PECLHPPSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATP-PPTVDPDRTKNCKP 24
P+ LHP V +P + + QV A PQ P PP P + ++ KP
Sbjct: 36 PQQLHPRGLPVMRSHHVVHVPLPRPAVAVAVPVPQVRPAQPQPVPRPPVAVPLKPESPKP 95
>09_06_0264 - 21929086-21931368
Length = 760
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 510 QTLADTXYVPXQENEVYYPQQPENPIFSPTQATELADPTEKV 385
+TLAD +P E E +P++ +SP+Q +PT V
Sbjct: 699 KTLADKLQMPEPEPEPEREPEPKSGPYSPSQEIVQGEPTATV 740
>06_01_0497 +
3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 158 GEVGPQVVPEARLQLPTHTAQVEEASPQATPPP 60
GE G +V + +L H A+++ A P PPP
Sbjct: 362 GEAGGSLVSKDGKKLGDHAARIKSAYPLPLPPP 394
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 140 VVPEARLQLPTHTAQVEEASPQATPPPTVDPDRTKN 33
+VP R LP AQ++E +P A + P +N
Sbjct: 541 IVPSPRSALPPKLAQIKEKAPTANAESSDQPSDNQN 576
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 140 VVPEARLQLPTHTAQVEEASPQATPPPTVDPDRTKN 33
+VP R LP AQ++E +P A + P +N
Sbjct: 846 IVPSPRSALPPKLAQIKEKAPTANAESSDQPSDNQN 881
>09_04_0430 + 17502387-17503505
Length = 372
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/57 (26%), Positives = 21/57 (36%)
Frame = -1
Query: 188 HPPSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPPTVDPDRTKNCKP*T 18
HPP+ + PQ P LPT +++P P + P R P T
Sbjct: 158 HPPAPMQQPQPQPPPQPTPPRAAPLPTPPRAPPQSTPPRAAPQSTPPQRVAPQPPAT 214
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 40 VRSGSTVGGGVACGDASSTCAVCVGNCSRASGTTCG 147
V ST VA + + TC VC+ + S T CG
Sbjct: 300 VAQTSTTHAKVAPKEPTFTCPVCLNKLDKPSTTNCG 335
>07_03_1157 - 24419157-24419948
Length = 263
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 203 HPECLHPPSFQCSSDGEVGPQVVPEA-RLQLPTHTAQVEEASPQATPPPTVDPDRTKNCK 27
H E HP + E VVPE + +LP H E + P P V P+ K+ +
Sbjct: 63 HEEPPHPVVPELPKHEEPPHPVVPELPKPELPPHPVVPELPKHEEPPHPAVVPELPKHEE 122
Query: 26 P 24
P
Sbjct: 123 P 123
>07_03_0089 - 13300902-13301645
Length = 247
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -1
Query: 206 PHPECLHPPSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPPTVDPDRTKNCK 27
P P+ P D + PQ P+ Q + Q + +PQ P PT PD ++ +
Sbjct: 104 PQPDPKPTPQPDPKQDPQPNPQPDPKPTPQ--PNPKQDPQPNPQPDPKPTPQPDPKQDPQ 161
Query: 26 P 24
P
Sbjct: 162 P 162
>06_03_1256 + 28787681-28788039,28788430-28788517
Length = 148
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +1
Query: 61 GGGVACGDASSTCAVCVGNCSRASGTTCGPTSPSEEHWKEGGCRH 195
GGGV C + S CS PT P+ H + C H
Sbjct: 82 GGGVPCKEKSGGHGGAPSPCSDDDDKRVVPTGPNPLHNRNKNCPH 126
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 146 PQVVPEARLQLPTHTAQVEEASPQATPPPTVD 51
PQ+ + R+ L H E+SP + PP +D
Sbjct: 745 PQIPDDKRINLDIHCKVPVESSPNTSTPPYMD 776
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 182 PSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPPTVDPDR 42
P + +S V P+V P+ P + ++ E PP VDP R
Sbjct: 471 PHVRHASSSSVSPKVSPKMSPVPPASSLKISELHLLPLPPANVDPVR 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,235,140
Number of Sequences: 37544
Number of extensions: 290942
Number of successful extensions: 1414
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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