Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L13
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.2  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.9  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 134 PEARLQLPTHTAQVEEASPQATPPPTV 54
           P   +Q+P   A ++++ P  +  PTV
Sbjct: 106 PSYSMQVPQQGASIDDSDPDPSSEPTV 132


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 134 PEARLQLPTHTAQVEEASPQATPPPTV 54
           P   +Q+P   A ++++ P  +  PTV
Sbjct: 554 PSYSMQVPQQGASIDDSDPDPSSEPTV 580


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 524 LIVAARPLPIPXTYRXKKTKXITLSNQRTRSSAPLKRPSWL 402
           +  AA    +  +Y     + IT+ N+R R    L +PS+L
Sbjct: 2   MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 42


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 498 DTXYVPXQENEVYYPQQPE 442
           D   VP + NE+YY   PE
Sbjct: 198 DLLGVPGKRNEIYYNCCPE 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,508
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)