Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L12
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788...   155   3e-38
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012...   153   1e-37
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352...    77   1e-14
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    28   6.6  
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816...    28   8.7  

>04_04_0724 +
           27578337-27578371,27578492-27578607,27578717-27578875,
           27578954-27579129,27580406-27580683,27580759-27580894,
           27580984-27581095,27581177-27581268
          Length = 367

 Score =  155 bits (377), Expect = 3e-38
 Identities = 76/147 (51%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
 Frame = -1

Query: 730 IIWGNHSSTQFPDASNAVAIVGGAXKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXXXXX 551
           IIWGNHSSTQFPDAS+A        + V E+I D+ +L+  FVT VQ+RGAAVI      
Sbjct: 219 IIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQS 278

Query: 550 XXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVTVTNGKWKIVEG 374
                     DHMRDW LGT +  WVSMGV SDGSYG P  V +SFPVT   G+W +V+G
Sbjct: 279 SSLSAASAACDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVTCEKGEWSVVQG 338

Query: 373 LTISDFARQMLDATGKELVEEKQEALD 293
           L I DFAR  ++ +  EL EEK  A +
Sbjct: 339 LEIDDFARSKMETSATELKEEKSIAYE 365


>10_08_0381 +
           17398972-17399014,17400823-17400981,17401066-17401241,
           17401565-17401842,17401938-17402073,17402183-17402294,
           17402421-17402515
          Length = 332

 Score =  153 bits (372), Expect = 1e-37
 Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
 Frame = -1

Query: 730 IIWGNHSSTQFPDASNAVAIVGGAXKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXXXXX 551
           IIWGNHSSTQ+PD ++A        K V E++ DD +L   F++TVQ+RGAA+I      
Sbjct: 183 IIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARKQS 242

Query: 550 XXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVTVTNGKWKIVEG 374
                     DH+RDW LGT E  +VSMGV SDGSYG P  ++YSFPVT + G+W IV+G
Sbjct: 243 SALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQG 302

Query: 373 LTISDFARQMLDATGKELVEEK 308
           L I +F+R+ +DAT +EL EEK
Sbjct: 303 LPIDEFSRKKMDATAQELSEEK 324


>08_02_1600 +
           28133818-28133900,28134240-28134345,28135169-28135255,
           28135354-28135438,28135510-28135691,28135921-28135991,
           28136078-28136168,28136250-28136324,28136436-28136537,
           28136620-28136742,28136823-28136891,28136990-28137058,
           28137158-28137211,28137315-28137368
          Length = 416

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
 Frame = -1

Query: 727 IWGNHSSTQFPDASNAVAIVGGAXKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXXXXXX 548
           IWGNHS+TQ PD  NA   + G  + V E+I D  +L+  F  TVQKRG  +I       
Sbjct: 252 IWGNHSTTQVPDFLNAK--ING--RPVKEVIKDTKWLEDEFTKTVQKRGGVLIQKWGRSS 307

Query: 547 XXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGS-YGTPRDVVYSFPV-TVTNGKWKIVE 377
                    D +R     T E  W S GV + G+ YG   D+V+S P  +  +G +++V+
Sbjct: 308 AASTAVSIVDAIRSLVNPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELVK 367

Query: 376 GLTISDFARQMLDATGKELVEEKQ 305
            + + DF  + +  +  EL+ EK+
Sbjct: 368 DVAMDDFLWERIKKSEAELLAEKR 391


>03_03_0008 -
           13674602-13674708,13675272-13675439,13676169-13676787,
           13676868-13677330,13677855-13678036,13678093-13678235,
           13678315-13678423,13679000-13679456,13680490-13682473,
           13682507-13682626,13682920-13682971
          Length = 1467

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 396 PLVTVTGNEYTTSRGVP*DPSETTPMLTHLSSVPRNQS 509
           P VT  G+E       P DP+E   +L  + ++P + S
Sbjct: 107 PSVTAVGSERCVVNSAPDDPTENVSILDEMRNIPLSTS 144


>03_02_0404 -
           8165211-8165318,8165397-8165733,8166031-8166242,
           8166419-8166526,8166676-8166783,8166884-8166993,
           8167122-8167228,8167349-8167566,8167674-8167841,
           8168033-8168151,8168438-8168525,8168655-8168849,
           8168968-8169271,8169363-8169480,8170034-8170133,
           8170283-8170468
          Length = 861

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 450 DPSETTPMLTHLSSVPRNQSLMWSDAALAAERADD 554
           +PSE +P     ++ P NQ L+W      A   DD
Sbjct: 619 NPSEASPEWVSDNAYPTNQPLIWYKTKFTAPAGDD 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,870,794
Number of Sequences: 37544
Number of extensions: 355875
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)