Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L12
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical ...   151   7e-37
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...   151   7e-37
AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical ...    74   1e-13
U70850-1|AAB09124.2|  104|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC006648-8|AAF39857.1|  302|Caenorhabditis elegans Btb and math ...    29   3.4  
U56965-9|AAB52662.2|  265|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine rece...    28   5.9  

>AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical
           protein F46E10.10c protein.
          Length = 181

 Score =  151 bits (365), Expect = 7e-37
 Identities = 69/151 (45%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
 Frame = -1

Query: 730 IIWGNHSSTQFPDASNAVAIVGGAXKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXXXXX 551
           IIWGNHS TQFPD ++A     G        + D+A+L+G F+ TVQKRG  +I      
Sbjct: 28  IIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKRKLS 87

Query: 550 XXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTVTNGKWKIVEG 374
                     DH+ DW  GT+  ++VSM V SDGSYG P+ +++SFPVT+  G+WKIV+G
Sbjct: 88  SAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTIEGGEWKIVQG 147

Query: 373 LTISDFARQMLDATGKELVEEKQEALDVCKD 281
           L+  DFA+  + AT KEL EE+ +AL  C D
Sbjct: 148 LSFDDFAKGKIAATTKELEEERDDALKACDD 178


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score =  151 bits (365), Expect = 7e-37
 Identities = 69/151 (45%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
 Frame = -1

Query: 730 IIWGNHSSTQFPDASNAVAIVGGAXKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXXXXX 551
           IIWGNHS TQFPD ++A     G        + D+A+L+G F+ TVQKRG  +I      
Sbjct: 183 IIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKRKLS 242

Query: 550 XXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTVTNGKWKIVEG 374
                     DH+ DW  GT+  ++VSM V SDGSYG P+ +++SFPVT+  G+WKIV+G
Sbjct: 243 SAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTIEGGEWKIVQG 302

Query: 373 LTISDFARQMLDATGKELVEEKQEALDVCKD 281
           L+  DFA+  + AT KEL EE+ +AL  C D
Sbjct: 303 LSFDDFAKGKIAATTKELEEERDDALKACDD 333


>AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical
           protein F46E10.10b protein.
          Length = 273

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/81 (39%), Positives = 42/81 (51%)
 Frame = -1

Query: 730 IIWGNHSSTQFPDASNAVAIVGGAXKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXXXXX 551
           IIWGNHS TQFPD ++A     G        + D+A+L+G F+ TVQKRG  +I      
Sbjct: 183 IIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKRKLS 242

Query: 550 XXXXXXXXXSDHMRDWFLGTE 488
                     DH+ DW  GT+
Sbjct: 243 SAMSAAKAACDHIHDWHFGTK 263


>U70850-1|AAB09124.2|  104|Caenorhabditis elegans Hypothetical
           protein F28F9.3 protein.
          Length = 104

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = -2

Query: 501 SLALKTDGLAWELFQMDLMVLRVMLYIHSLLLLPMESGKLLRVSLSLILPVKCSMLLA 328
           S+  K  G+ W+ +++  + +  +L +HSLL+LP+  G L ++S++L + +  S  LA
Sbjct: 11  SITRKYFGIRWD-YRISSINMASLLDLHSLLVLPL--GDLPKISIALPISLALSNSLA 65


>AC006648-8|AAF39857.1|  302|Caenorhabditis elegans Btb and math
           domain containingprotein 1 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 584 WCCRYCRQENVICSFCC*SCIRPHERLVPW 495
           W   +CR+E  +  F    C+RP + +VPW
Sbjct: 36  WQLSFCRKEEFVGVFL--RCLRPTDGIVPW 63


>U56965-9|AAB52662.2|  265|Caenorhabditis elegans Hypothetical
           protein C15H9.2 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 633 LIISETDFXAPPTIATAFEASG-NWVDEWFP 722
           LII  TDF +  T  + FE SG + V EW P
Sbjct: 65  LIIHCTDFKSSSTFTSQFERSGESVVHEWLP 95


>U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 1 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 162 PNHGRLKSIIVKAFINVFIFVLEL*MFLKHSDSVVKYFMSFCSLSLSYHI 13
           P HG +K +++  F++ F+F + L +   +   V  +  S C L +  ++
Sbjct: 49  PFHGNIKFMLISYFLSAFLFAVVLALTFGYHILVPLFITSKCDLIIQPYL 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,558
Number of Sequences: 27780
Number of extensions: 334527
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)