Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L10
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    26   5.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.2  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   5.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   5.2  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    26   5.2  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.9  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   6.9  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   6.9  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.9  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   9.1  

>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 427 RTVYVVISKGINLFPKYSGQSRPCSRQIKTAYKNYILENTT 305
           R VYV   KGI   P Y+G S   S  +K   +   ++NTT
Sbjct: 231 RVVYVGNEKGIIWIPLYTGSS-TFSNNVKEKKRVTSVDNTT 270


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 272 SNNTKILKFANKISLHYLSHKTNLYSFWDLLSVDSN 165
           SN T+  +FAN ISL        +  +W  L+  +N
Sbjct: 892 SNKTECTEFANNISLKTWKGHHVIVQYWSRLTASAN 927


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 396 IPLLITTYTVRSDNIPNE 449
           +P L+T +  RSDN PNE
Sbjct: 482 VPNLVTGFPTRSDNPPNE 499


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 209 TNLYSFWDLLSVDSNIR*RCGHTS 138
           T++Y  W    VDS I   CG TS
Sbjct: 407 TSIYHAWKAFDVDSTIGGMCGKTS 430


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 587 GIFER*NIDSCNIEDNYYNILDILILRD 670
           G+FE   +DSC   D  +N+ D+L + D
Sbjct: 490 GLFEN-YVDSCVTTDEAFNVCDLLSISD 516


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 519 LNMTVKYCL-LKFLMACKNCW 460
           L++TVKYCL +K L+    CW
Sbjct: 36  LSLTVKYCLAVKLLIYLLYCW 56


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 519 LNMTVKYCL-LKFLMACKNCW 460
           L++TVKYCL +K L+    CW
Sbjct: 36  LSLTVKYCLAVKLLIYLLYCW 56


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 519 LNMTVKYCL-LKFLMACKNCW 460
           L++TVKYCL +K L+    CW
Sbjct: 36  LSLTVKYCLAVKLLIYLLYCW 56


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 519 LNMTVKYCL-LKFLMACKNCW 460
           L++TVKYCL +K L+    CW
Sbjct: 36  LSLTVKYCLAVKLLIYLLYCW 56


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 384 GNKLIPLLITTYTVRSDNIPNELYVPNNFCKPL 482
           G + + + +T Y VR D + N LY P    KPL
Sbjct: 763 GKQAMGVYLTNYQVRMDTMANILYYPQ---KPL 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,775
Number of Sequences: 5004
Number of extensions: 63587
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)