Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L10
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    28   7.2  
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150...    28   9.5  

>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 238 KLVCIIYHTKQICIVFGIFYQ*ILIFANGAATRVVLLLCAC-SCYCNLEYCVIL 80
           K VCI  H++++ + FG     ++    GA  R+V  L  C  C+  ++ C+ L
Sbjct: 498 KEVCISQHSEKLAVAFG-----LINTRRGAVIRIVKNLRICEDCHSVMKECICL 546


>09_02_0504 -
           10013784-10014041,10014558-10014660,10014932-10015093,
           10015416-10015549,10015633-10015716,10015839-10016129,
           10016362-10016694,10016823-10016965,10017273-10017429,
           10017513-10017616,10017728-10017888,10017971-10018287,
           10018396-10018677,10018759-10019226,10019338-10019391,
           10019689-10019742,10019943-10020021,10020108-10020196,
           10021153-10021273,10022321-10022637
          Length = 1236

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 378 YFGNKLIPLLITTYTVRSDNIPNELYVPNNFCKPLEILIN 497
           Y G + +P ++ TYT+  + + N L +       + IL N
Sbjct: 128 YVGRRGLPTILNTYTIIMEGLTNALCITKKITHKIPILHN 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,142,082
Number of Sequences: 37544
Number of extensions: 315703
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)