Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L10
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid...    36   0.024
U88170-1|AAB42248.2|  438|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    28   8.5  

>U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid
           phosphatase protein4 protein.
          Length = 461

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 311 YNHLFSNQNL*CASNNTKILKFANKISLH-YLSHKTNLYSFWDLLSV 174
           YNH+  N+   C+SNN K   + N++    Y +H T LY+ + LL V
Sbjct: 303 YNHM--NRKTQCSSNNGKECTYTNRLKFFAYSAHDTTLYALFSLLGV 347


>U88170-1|AAB42248.2|  438|Caenorhabditis elegans Hypothetical
           protein C10G11.8 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 70  IHLLKLHNIQDYSNMNKHIVTRQLVWPHR*RILESTDRRSQKL 198
           + LLK++ I DY  + K  +TRQ       R L    RR Q+L
Sbjct: 48  VRLLKMNRIHDYLQLEKEFITRQT--SRHGRPLAVQKRREQQL 88


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -2

Query: 340 TAYKNYILENTTTYLVIKICDAQV---ITLKY*NLQIKLVCIIYHTKQ 206
           T+Y+NY L+  T  ++ KI D  +   +++ Y  + I LV  +  TK+
Sbjct: 215 TSYENYYLDGGTNEIIFKIIDGYIGICVSILYILVTIFLVVELQKTKR 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,582
Number of Sequences: 27780
Number of extensions: 349909
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)