Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_L10
(773 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 25 1.0
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 1.8
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.8
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 24 1.8
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 24 1.8
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 24 1.8
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 23 3.2
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 23 3.2
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 23 3.2
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 23 3.2
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 3.2
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 23 3.2
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 23 3.2
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 23 3.2
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 23 3.2
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 4.2
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 22 7.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 7.3
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 9.6
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 24.6 bits (51), Expect = 1.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 653 YRVYYNNYLQCYKNRYFNV 597
Y Y NNY YK Y+N+
Sbjct: 337 YNNYNNNYNNNYKKLYYNI 355
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 172 ILIFANGAATRVVLLLCACSCYCNLEY 92
I I +G+ TR + L SC NL+Y
Sbjct: 118 IRIHHSGSITRSIRLTITASCPMNLQY 144
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 172 ILIFANGAATRVVLLLCACSCYCNLEY 92
I I +G+ TR + L SC NL+Y
Sbjct: 118 IRIHHSGSITRSIRLTITASCPMNLQY 144
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.8 bits (49), Expect = 1.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 644 YYNNYLQCYKNRYFNVQK 591
Y NNY + YKN N+++
Sbjct: 109 YNNNYKKLYKNYIINIEQ 126
Score = 22.6 bits (46), Expect = 4.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 653 YRVYYNNYLQCYKNRYFNVQK 591
Y Y NNY Y N Y N K
Sbjct: 94 YNNYNNNYNNNYNNNYNNNYK 114
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.8 bits (49), Expect = 1.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 644 YYNNYLQCYKNRYFNVQK 591
Y NNY + YKN N+++
Sbjct: 109 YNNNYKKLYKNYIINIEQ 126
Score = 22.6 bits (46), Expect = 4.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 653 YRVYYNNYLQCYKNRYFNVQK 591
Y Y NNY Y N Y N K
Sbjct: 94 YNNYNNNYNNNYNNNYNNNYK 114
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 172 ILIFANGAATRVVLLLCACSCYCNLEY 92
I I +G+ TR + L SC NL+Y
Sbjct: 57 IRIHHSGSITRSIRLTITASCPMNLQY 83
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 91 YNNYNNNYKPLYYNI 105
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 91 YNNYNNNYKPLYYNI 105
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 91 YNNYNNNYKPLYYNI 105
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 91 YNNYNNNYKPLYYNI 105
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 324 YNNYNNNYKPLYYNI 338
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 324 YNNYNNNYKPLYYNI 338
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 324 YNNYNNNYKPLYYNI 338
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 324 YNNYNNNYKPLYYNI 338
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 641 YNNYLQCYKNRYFNV 597
YNNY YK Y+N+
Sbjct: 313 YNNYNNNYKPLYYNI 327
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.6 bits (46), Expect = 4.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 611 DSCNIEDNYYN 643
+SCN +NYYN
Sbjct: 309 NSCNYSNNYYN 319
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.8 bits (44), Expect = 7.3
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +3
Query: 327 FLYAVFICLLHGRLCPEYFGNKLIPLLITTYTVRSDNIPNELYVPNN 467
FL+ VF+ L +G + +I +R+ I N Y+ N
Sbjct: 4 FLWIVFLALANGEEIKTIYSWNVIEYNFPNDNIRNTLISNGDYIEEN 50
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 653 YRVYYNNYLQCYKNRYFNV 597
Y Y NN YK Y+N+
Sbjct: 338 YNNYNNNNYNNYKKLYYNI 356
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 653 YRVYYNNYLQCYKNRYFNV 597
Y Y NNY K Y+N+
Sbjct: 94 YNNYNNNYNNYNKKLYYNI 112
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,208
Number of Sequences: 438
Number of extensions: 4872
Number of successful extensions: 30
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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