Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L02
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    27   3.1  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   5.3  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   7.1  
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.3  

>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 185 LNRK*LHKNNIQIQLKNMYKTFCILI 262
           L  K +H+  ++ +LKN+ KT+C LI
Sbjct: 34  LRHKRVHEEQLRDKLKNVRKTYCGLI 59


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 446 PSSFIHFSNNSATKVS-GVHVLKSAFGIHXLFISVSNVTGII 568
           P S++ +S  S+  +  G    K+ +G+   +  VSNVTG+I
Sbjct: 409 PCSYLCYSLASSCPLDLGFACPKAGYGLEFSYGEVSNVTGLI 450


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 451 ILHP---LFK*LSHKGQRSPCTEVRFWHPFXVHFCIQC 555
           I+HP   L   L+H   +S  +EV F  P   H  +QC
Sbjct: 364 IIHPCLHLNASLTHPDSKSEASEVVFVGPSLAHLSLQC 401


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 636 VHQLTKSLGAKDSGLPENSL 577
           V+ LTKS  +K+ G+ +NSL
Sbjct: 41  VNDLTKSSSSKEEGIADNSL 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,975
Number of Sequences: 5004
Number of extensions: 42583
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)