Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L02
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525...    30   1.8  
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420...    29   2.4  
01_06_1088 - 34439311-34439987,34440080-34440136,34442790-344429...    29   3.2  
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    28   5.5  

>06_01_0721 -
           5255422-5255790,5256287-5256660,5256845-5257192,
           5257369-5257497,5257585-5257658,5257745-5257816,
           5257901-5257969,5258059-5258130,5258208-5258279,
           5258512-5258583,5258735-5258806,5258887-5258958,
           5259050-5259121,5259203-5259274,5259427-5259498,
           5259599-5259670,5259764-5259832,5260072-5260143,
           5260428-5260499,5260579-5260650,5260919-5260990,
           5261015-5261161,5261249-5261378,5262212-5262290
          Length = 931

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 458 IHFSNNSATKVSGVHVLKSAFGIHXLFISVSNVTGIIATANEFS 589
           ++  NN+ T    V  L + F ++ L +S +N+ G++ T N FS
Sbjct: 454 LNLKNNNIT--GDVSSLMNCFSLNILNVSYNNLAGVVPTDNNFS 495


>12_02_0244 -
           16241243-16241279,16241781-16241848,16241930-16242032,
           16242095-16242256,16242305-16242369,16242547-16242612,
           16242738-16242829,16243029-16243134,16243231-16243279,
           16243387-16243540,16243661-16243687,16243797-16243959,
           16244621-16244701
          Length = 390

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 481 HKGQRSPCTEVRFWHPFXVHFCIQCNR 561
           ++  RS C ++R W  +  H CI C +
Sbjct: 136 YEKSRSSCVQIRNWFDYRNHICIVCEK 162


>01_06_1088 -
           34439311-34439987,34440080-34440136,34442790-34442919,
           34443499-34443740,34443857-34444008,34444381-34444461,
           34444547-34444612,34444692-34444763,34444843-34444984,
           34445146-34445645,34446625-34447192,34447248-34447257
          Length = 898

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 522 PKADFSTWTPLTFVAELFEKWMKDEGRPA 436
           P+A FS ++P +F++ +F  W   +GR A
Sbjct: 295 PQALFSNFSPPSFLSSMFHNWFLRKGRRA 323


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 467 SNNSATKVSGVHVLKSAFGIHXLFISVSNVTGIIATANEFS 589
           SNN    VS    L + F ++ L +S +N+ GI+ T N FS
Sbjct: 406 SNNITGDVSS---LINCFSLNVLNVSYNNLAGIVPTDNNFS 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,442,830
Number of Sequences: 37544
Number of extensions: 220926
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)