Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L02
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                   75   5e-14
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    31   0.80 
SB_38470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   29   4.3  

>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 39/83 (46%), Positives = 50/83 (60%)
 Frame = -1

Query: 645 KAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDTEMNXKWMPKADFSTWTPLTFVAELFE 466
           KAAVHQLT  LG   + LP +S A+AI+P TLDT MN K+MP+AD S WTPL +VA   +
Sbjct: 190 KAAVHQLTVGLGMDGNTLPPDSTALAILPNTLDTPMNRKFMPEADQSQWTPLEYVANWAQ 249

Query: 465 KWMKDEGRPANGSLVALVTXNNV 397
            +        N   V  V  N++
Sbjct: 250 GYDGGSATYINKHTVCFVCGNSI 272


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 423 LNCHSLDGLHPSSTFQITQPQRSAE 497
           L  HS DG  PS T+ ITQ ++SAE
Sbjct: 584 LPSHSADGSRPSDTWAITQREKSAE 608


>SB_38470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 153 QYNTSLQ*IQRSTENSYTKTTFKYNLKICIKHFVF*YLFNLT*NKVNTTIVL 308
           QYNTS+Q        S   TT +YN  + +    +     LT ++ NT+++L
Sbjct: 62  QYNTSMQLTTHQYNTSMLLTTHQYNTSMQLTTHQYNTSMQLTTHQYNTSMLL 113



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 153 QYNTSLQ*IQRSTENSYTKTTFKYNLKICIKHFVF*YLFNLT*NKVNTTIVL 308
           QYNTS+Q        S   TT +YN  + +    +     LT ++ NT++ L
Sbjct: 84  QYNTSMQLTTHQYNTSMQLTTHQYNTSMLLTTHQYNTSMQLTTHQYNTSMQL 135



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 153 QYNTSLQ*IQRSTENSYTKTTFKYNLKICIKHFVF*YLFNLT*NKVNTTIVL 308
           QYNTS+Q        S   TT +YN  + +    +     LT ++ NT++ L
Sbjct: 95  QYNTSMQLTTHQYNTSMLLTTHQYNTSMQLTTHQYNTSMQLTTHQYNTSMQL 146



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 153 QYNTSLQ*IQRSTENSYTKTTFKYNLKICIKHFVF*YLFNLT*NKVNTTIVL 308
           QYNTS+Q        S   TT +YN  + +   ++     LT +  NT++ L
Sbjct: 117 QYNTSMQLTTHQYNTSMQLTTHQYNTSMQLTTHLYNTSMQLTTHLYNTSMQL 168


>SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 573 VAIMPVTLDTEMNXKWMPKADFSTWTPLTFVAELFEKWMKDE 448
           V  MPV+ + E N KW+    F+      FV + F+K  +D+
Sbjct: 67  VQSMPVSPEEEENDKWLSADFFAGGVEPAFVEQTFKKRSRDK 108


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 573  VAIMPVTLDTEMNXKWMPKADFSTWTPLTFVAELFEKWMKDE 448
            V  MPV+ + E N KW+    F+      FV + F+K  +D+
Sbjct: 1338 VQSMPVSPEEEENDKWLSADFFAGGVEPAFVEQTFKKRSRDK 1379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,544,135
Number of Sequences: 59808
Number of extensions: 281344
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)