Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_L02
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...   109   2e-24
U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenase...    27   8.6  
AF016684-8|AAB66211.1|  302|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
 Frame = -1

Query: 645 KAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDTEMNXKWMPKADFSTWTPLTFVAELFE 466
           KAAVH LT SL AKDSGLP+NS  + IMPVTLDT MN KWMP AD S+WTPL+F++E   
Sbjct: 147 KAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNADHSSWTPLSFISEHLL 206

Query: 465 KWMKD-EGRPANGSLVALVTXNNVTDL 388
           KW  +   RP++G+L+ + T N  + +
Sbjct: 207 KWTTETSSRPSSGALLKITTENGTSTI 233


>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 549 DTEMNXKWMPKADFSTWTPLTFVAELFEKWMKDEGRPANGSLVALVT 409
           D ++  +W     F   T      + F+KW+KD G   N ++   +T
Sbjct: 11  DADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMT 57


>AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical
           protein C01B4.9 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 428 LPFAGRPSSFIHFSNNSATKVSGVHVLKSAFGIHXLFISVSNVTG--IIATANEFSG 592
           +PF+   + F    +    ++ GV  L +AFGI  +F+ +  V G  I A   + +G
Sbjct: 466 IPFSAGVACFAALRSVICVELIGVEKLSNAFGILMVFMGIGAVVGGPIAAQIKDITG 522


>AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical
           protein Y19D10A.12 protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 428 LPFAGRPSSFIHFSNNSATKVSGVHVLKSAFGIHXLFISVSNVTG--IIATANEFSG 592
           +PF+   + F    +    ++ GV  L +AFGI  +F+ +  V G  I A   + +G
Sbjct: 439 IPFSAGVACFAALRSVICVELIGVEKLSNAFGILMVFMGIGAVVGGPIAAQIKDITG 495


>AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenases,
           short chain protein16 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 207 LCNYFLLSVEFIVEMYYIESIGKF 136
           LC  + L   F++E +Y+ES GK+
Sbjct: 11  LCFVYFLFRRFVLENFYVESSGKY 34


>AF016684-8|AAB66211.1|  302|Caenorhabditis elegans Hypothetical
           protein F45C12.13 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 192 ENSYTKTTFKYNLKICIKHFVF 257
           +  +T TT K+N K C+ HF++
Sbjct: 59  QERFTFTTQKFNAKSCLNHFLY 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,744,150
Number of Sequences: 27780
Number of extensions: 232044
Number of successful extensions: 421
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)