Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K24
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54F11 Cluster: Putative homeobox transcription factor;...    34   3.8  
UniRef50_Q54JG4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_UPI00006CAAA6 Cluster: PHD-finger family protein; n=1; ...    33   8.7  
UniRef50_Q3DGK6 Cluster: Membrane protein, putative; n=8; Strept...    33   8.7  
UniRef50_Q8I5I2 Cluster: Putative uncharacterized protein; n=3; ...    33   8.7  
UniRef50_Q4UAK6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.7  

>UniRef50_Q54F11 Cluster: Putative homeobox transcription factor;
           n=1; Dictyostelium discoideum AX4|Rep: Putative homeobox
           transcription factor - Dictyostelium discoideum AX4
          Length = 667

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 175 NNSLQKKKQHYYERLNFPKKNNRKEMTTRNNKPTHVNLW*KNQDK-SI*WSKLSIFTSQH 351
           NN+    K   Y  +N P  NN     + NN   ++NL   N +K S+  + ++I  + +
Sbjct: 220 NNNNNNNKNTVYNNVNIPNNNNFNLNLSNNN--NNLNLTNNNNNKNSVNNNNVNISNNNN 277

Query: 352 DNKLSF*RHNNNIKI 396
           +N  +    NNN+ I
Sbjct: 278 NNNFNVNLSNNNVNI 292


>UniRef50_Q54JG4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 631

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +1

Query: 160 YILVYNNSLQKKKQHYYERLNFPKKNNRKEMTTRNNKPTHVNLW*KNQDKSI*WSKLSIF 339
           ++L+YN   Q    + Y   N    NN       NN   + N    N + +I  + L+I+
Sbjct: 119 HLLIYNEQTQDNTNNMYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNI-NTNLNIY 177

Query: 340 TSQHDNKLSF*RHNNN 387
            + ++N  +   +NNN
Sbjct: 178 NNNNNNNNNNNNNNNN 193


>UniRef50_UPI00006CAAA6 Cluster: PHD-finger family protein; n=1;
           Tetrahymena thermophila SB210|Rep: PHD-finger family
           protein - Tetrahymena thermophila SB210
          Length = 3760

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 175 NNSLQKKKQHYYERLNFPKKNNRKEMTTRNNKPTHVN 285
           +N   +K+QHYY+  N+P  N  ++   +N +  + N
Sbjct: 726 SNKFNQKQQHYYQNQNYPNSNQYQQGMAQNQQVPYQN 762


>UniRef50_Q3DGK6 Cluster: Membrane protein, putative; n=8;
           Streptococcus agalactiae|Rep: Membrane protein, putative
           - Streptococcus agalactiae CJB111
          Length = 772

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 193 KKQHYYERLNFPKKNNRKEMTTRNNKPTHVNLW*K-NQDKSI*WSKLS 333
           +K HYY  + FPK  +RK  T    KP  +N+  K  + +S   SK+S
Sbjct: 95  EKGHYYMVITFPKDLSRKATTLMTEKPERLNITYKTTKGRSFVASKMS 142


>UniRef50_Q8I5I2 Cluster: Putative uncharacterized protein; n=3;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 4494

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 184  LQKKKQHYYERLNFPKKNNRKEMTTRNNKPTHVNLW*KNQDKS 312
            +QK+ Q+Y  + NF KK+  KE   +NNK    N   KN D +
Sbjct: 3591 IQKEAQNYKNKNNFNKKDRPKEKNNKNNKKKKRNN--KNHDNN 3631


>UniRef50_Q4UAK6 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 1228

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 24/69 (34%), Positives = 36/69 (52%)
 Frame = +1

Query: 184 LQKKKQHYYERLNFPKKNNRKEMTTRNNKPTHVNLW*KNQDKSI*WSKLSIFTSQHDNKL 363
           L KK   Y +  N  +K   KE+   NNK  +++++ K   K+  +SK  I T+ H+N  
Sbjct: 227 LSKKILPYKKINNEERKKILKEILLENNK-YNIDIYPKFFIKNSFFSKFLIETNLHNNLQ 285

Query: 364 SF*RHNNNI 390
               HNNNI
Sbjct: 286 FCTNHNNNI 294


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,856,894
Number of Sequences: 1657284
Number of extensions: 10808269
Number of successful extensions: 24461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24392
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)