Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K24
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   3.4  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   5.9  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    25   7.8  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   7.8  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 232 KNNRKEMTTRNNKPTHVNL 288
           K   KE+ TRN KP H N+
Sbjct: 63  KPTEKEVPTRNEKPKHANI 81


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 495 LQNRIQYKATSKKDKRYITTSFLIDITRKSDINCEYLKLKISSLPIMDYNNSE*YII 665
           L+N IQ+    + D+    TSFL + +    I  +Y   +I ++  +DY  +  +++
Sbjct: 217 LRNYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQ-LDYTTAHEHLV 272


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 299 IKIKVSSGRNYLSSRRNTITN 361
           I+I  SSG   +S+RRN ITN
Sbjct: 140 IEISYSSGLRDVSNRRNLITN 160


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 60  TICDTHFCFKCELC 19
           T+C+TH  +KC+ C
Sbjct: 785 TVCETHETYKCKRC 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,467
Number of Sequences: 5004
Number of extensions: 49716
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)