Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K23
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0947 + 22897552-22897614,22898291-22898513,22898599-228988...    27   4.6  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    26   8.0  
09_04_0354 + 16919133-16919235,16920145-16920355,16920478-169205...    26   8.0  
01_01_0091 - 719842-720902,721042-721071,721521-722226                 26   8.0  

>08_02_0947 +
           22897552-22897614,22898291-22898513,22898599-22898892,
           22899346-22900598
          Length = 610

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 119 VLSHHVVNVKKLHEFKHFNQIRY 51
           VL+H++ N++ LHE   F  +RY
Sbjct: 459 VLAHYIRNMRSLHEVTVFLTLRY 481


>11_01_0346 -
           2589111-2589220,2589613-2589852,2589956-2590028,
           2590301-2590606,2590698-2590912,2591461-2591755,
           2591901-2592065,2592142-2592738,2593029-2593115,
           2593203-2593523,2594047-2596071
          Length = 1477

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 268 DLKFKYIIKQYLHVRVLKLYSEFTEF 191
           D++ K + +  +H++VLKLY+  T F
Sbjct: 477 DVRLKAMTESLVHMKVLKLYAWETHF 502


>09_04_0354 +
           16919133-16919235,16920145-16920355,16920478-16920544,
           16920767-16920808
          Length = 140

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 207 EYNFNTLTCRYCFIMYLNFKSKCNRKK 287
           +YN N L CR C+       + C +KK
Sbjct: 95  KYNENKLVCRRCYARLPLRSTNCRKKK 121


>01_01_0091 - 719842-720902,721042-721071,721521-722226
          Length = 598

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 152 GM*ISCKSEKNVLSHHVVNVKKL 84
           GM +SC  +  +L HHV+ + K+
Sbjct: 43  GMQLSCSGQDTLLLHHVLGLSKV 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,158,677
Number of Sequences: 37544
Number of extensions: 89875
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)