Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K23
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    27   3.2  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    27   3.2  
AC084155-3|AAY86295.1|  129|Caenorhabditis elegans Hypothetical ...    27   3.2  
U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    25   9.7  

>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
           protein 2, isoform a protein.
          Length = 1538

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 125 KNVLSHHVVNVKKLHEFKHFNQIRYFCLLSSXDVYS 18
           KNV++   +NV K+   + +N++ Y  + S   +YS
Sbjct: 567 KNVINCKCINVLKILTGEDWNEVMYLAIESQGGIYS 602


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
           protein 2, isoform c protein.
          Length = 1926

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 125 KNVLSHHVVNVKKLHEFKHFNQIRYFCLLSSXDVYS 18
           KNV++   +NV K+   + +N++ Y  + S   +YS
Sbjct: 567 KNVINCKCINVLKILTGEDWNEVMYLAIESQGGIYS 602


>AC084155-3|AAY86295.1|  129|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.4 protein.
          Length = 129

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 292 EYFFLLHFDLKFKYIIKQYLHVRVLKLYSEFTEF 191
           EY +   FD  F Y+  QY H  V   +++ T+F
Sbjct: 9   EYLYSQEFDALFHYLFNQYKH-GVFGRFNDHTDF 41


>U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical
           protein F10E7.1 protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 204 SEYNFNTLTCRYCFIMYLNFKSKCNRKKYS 293
           +EY      CRYC+I YLN++   + K  S
Sbjct: 114 TEYMGTDYECRYCYI-YLNYQKVTSNKMSS 142


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 210 YNFNTLTCRYCFIMYLNFKSKCNRKKYSTRVQFDE 314
           YNFN +TC  C      F+   N++K   R  F+E
Sbjct: 110 YNFNVITCESCKAF---FRRNANKEK-EIRCPFNE 140


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 210 YNFNTLTCRYCFIMYLNFKSKCNRKKYSTRVQFDE 314
           YNFN +TC  C      F+   N++K   R  F+E
Sbjct: 110 YNFNVITCESCKAF---FRRNANKEK-EIRCPFNE 140


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 210 YNFNTLTCRYCFIMYLNFKSKCNRKKYSTRVQFDE 314
           YNFN +TC  C      F+   N++K   R  F+E
Sbjct: 110 YNFNVITCESCKAF---FRRNANKEK-EIRCPFNE 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,160,486
Number of Sequences: 27780
Number of extensions: 103683
Number of successful extensions: 230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)