Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K19
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical...    27   7.6  
AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical...    27   7.6  

>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical protein
            C06E1.10 protein.
          Length = 1148

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 258  ELLFNKVKRKEITL-PSLKTFLPDSQNLNWTLKELLIWLKDNL 133
            E+L NK+  KE+T   SLK      +N NW L+E L W+ +++
Sbjct: 1082 EMLLNKLIEKEVTTRSSLKEQW--LKNENWLLEEYLEWVPESV 1122


>AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical
           protein Y105C5B.4 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 440 FLDRFKVKQITQIDSNFLQLFVNCLYLFV-YFYI 342
           F+D+       +I  +FL  F+NCLYL + YFY+
Sbjct: 179 FIDKQMTSTFFKIGGSFL--FLNCLYLIIAYFYL 210


>AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1b protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 4   AFLIFFAXIISLSVALPVFFIDQHXXTRSDRIILQEQLFSFHQQVVL*PNQQLF*RPIQI 183
           A L  F+  +  S+ +P    D H  T+  ++   +QLFSF + +   PN +    P   
Sbjct: 208 ARLKHFSSALLPSMTIPSANGDLHLETKIHKLFHDDQLFSFQRALGFSPNGEFIAAPCAH 267

Query: 184 LRI 192
           L +
Sbjct: 268 LEL 270


>AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1a protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 4   AFLIFFAXIISLSVALPVFFIDQHXXTRSDRIILQEQLFSFHQQVVL*PNQQLF*RPIQI 183
           A L  F+  +  S+ +P    D H  T+  ++   +QLFSF + +   PN +    P   
Sbjct: 210 ARLKHFSSALLPSMTIPSANGDLHLETKIHKLFHDDQLFSFQRALGFSPNGEFIAAPCAH 269

Query: 184 LRI 192
           L +
Sbjct: 270 LEL 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,748
Number of Sequences: 27780
Number of extensions: 240465
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)