Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_K11
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 153 5e-39
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 153 5e-39
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 25 4.1
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 4.1
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 24 7.1
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 24 7.1
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 24 7.1
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 7.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 9.4
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 153 bits (372), Expect = 5e-39
Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)
Frame = -3
Query: 301 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 122
MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GK
Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60
Query: 121 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFG 5
IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G
Sbjct: 61 IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVG 100
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 153 bits (372), Expect = 5e-39
Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)
Frame = -3
Query: 301 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 122
MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GK
Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60
Query: 121 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFG 5
IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G
Sbjct: 61 IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVG 100
>SPBC4F6.15c |swi10|rad23|DNA repair
endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 4.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 6 PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTTILP 128
P ++ SR+ SI + K + PH+ ++P +T I+P
Sbjct: 30 PTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVP 70
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 24.6 bits (51), Expect = 4.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 168 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 308
P +I N +L+ L R F R L + + + +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 163 IGEFEIVDDHRAGKIVVNLTGR 98
IGE I+ D+RA I++ + GR
Sbjct: 535 IGELRILVDYRAQSIILPIFGR 556
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 23.8 bits (49), Expect = 7.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 256 NAEKRGKRQVLI--RPCSKVIVKFLTVMMKHGYIGEFEI 146
+A+ G R V++ RPC FLT+M ++ Y+ E I
Sbjct: 67 DAQLGGIRNVVLINRPCFAASDNFLTLMGQNWYLKERNI 105
>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
Q0130|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 74
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 51 LMGTSKRGEMTPHLFSLPV 107
+ GTS+ + PHLFS+ +
Sbjct: 32 ISGTSRNPSVRPHLFSMAI 50
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 23.8 bits (49), Expect = 7.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 147 ISNSPM*PCFIITVKNLTMTLEQGLMRTCLFP--RFSALCIDFKASLNT 287
I ++P PC I V+ + + L+R L+P R S L +D + L T
Sbjct: 350 IDSTPSTPCLISVVRTGFRSNKGQLIRNLLYPNLRPSQLYLDSMSFLKT 398
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 108 SQAD*TSVVSFHLVLMFPST 49
S D TS++SF+ + + PST
Sbjct: 124 SNTDSTSILSFNTIRLIPST 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,843
Number of Sequences: 5004
Number of extensions: 21196
Number of successful extensions: 58
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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