Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_K11
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 167 1e-42
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 167 3e-42
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 94 2e-20
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 9e-05
11_01_0526 - 4140853-4141017,4141416-4141619 28 1.6
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 3.8
07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487... 27 5.0
07_01_0802 - 6287180-6287605 27 5.0
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 27 5.0
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 26 6.6
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 26 6.6
09_04_0577 + 18668502-18668690,18669090-18669254 26 8.7
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 167 bits (407), Expect = 1e-42
Identities = 79/100 (79%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Frame = -3
Query: 301 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 122
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 121 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFG 5
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFG 100
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 167 bits (405), Expect = 3e-42
Identities = 78/100 (78%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Frame = -3
Query: 301 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 122
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 121 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFG 5
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFG 100
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 94.3 bits (224), Expect = 2e-20
Identities = 43/95 (45%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Frame = -3
Query: 286 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 107
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 106 TGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFG 5
GR+ C ++ R D+ +IE++ +LP+RQ+G
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWG 99
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 145 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 44
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 127 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 32
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 127 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 32
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
>07_03_1420 +
26448009-26448085,26448302-26448394,26448634-26448727,
26448822-26448859,26448999-26449090,26449179-26449258,
26449332-26449388,26449420-26449449,26449505-26449597,
26449766-26449840,26449888-26449959
Length = 266
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -3
Query: 178 MKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 38
+++G+ +I D +R K + +LTG++ +C + FD + + E+
Sbjct: 25 LQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRILKEDEK 71
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -2
Query: 134 QSWQDCCKSHRQTKQVWC 81
Q WQDCC+ WC
Sbjct: 51 QVWQDCCRQLAAVDDGWC 68
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -3
Query: 202 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 38
++K LT ++ IG +EI +HR K+ L G L CGV +F + I++
Sbjct: 583 VIKVLTELLDQLDIGTYEIKLNHR--KL---LDGMLEICGVPPEKFRTVCSSIDK 632
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 260 YRF*GVTQYVHTHHG*DLA 316
+RF GVT ++THHG +A
Sbjct: 470 FRFDGVTSMMYTHHGLQVA 488
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 235 RQVLIRPCSKVIVKFLTVMMKHGY-IGEFEIVDDHRAGKIVVN 110
R + CS V+ K LT+ M+HGY + + E +D H + ++
Sbjct: 304 RAFIDNACSMVLKKSLTI-MEHGYAVIDLEKLDPHNVDDLFLS 345
>09_04_0577 + 18668502-18668690,18669090-18669254
Length = 117
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 145 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 32
V D R I N+ L+KCGVI+P +D+ T
Sbjct: 70 VGDGRVHSITENI---LDKCGVIAPNLPTKTDDLSHST 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,773,284
Number of Sequences: 37544
Number of extensions: 130988
Number of successful extensions: 303
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -