Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_K11
(336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 173 3e-44
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 29 0.63
U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical pr... 28 1.9
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 27 2.5
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 26 5.8
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 26 5.8
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 26 5.8
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 26 7.7
U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical pr... 26 7.7
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 173 bits (421), Expect = 3e-44
Identities = 83/100 (83%), Positives = 93/100 (93%), Gaps = 1/100 (1%)
Frame = -3
Query: 301 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 122
MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60
Query: 121 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFG 5
IVVNLTGRLNK VISPR ++ +ND+E++TN LLPSRQFG
Sbjct: 61 IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFG 100
>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
F37A4.4 protein.
Length = 1163
Score = 29.5 bits (63), Expect = 0.63
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 289 NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 116
NVL D+++ I+ N K KR I C+K L V + GY EI+ H A +
Sbjct: 826 NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885
Query: 115 VN 110
+N
Sbjct: 886 LN 887
>U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical
protein F22A3.2 protein.
Length = 145
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 86 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 232
++V +A E ++ + + F+ +V V + ++DDFG+ PD+DL
Sbjct: 14 SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 148 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 29
+VD KI + + NKCG I + + + WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 328 LRSAS*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 164
L A I M + + +DA + H + + + + +RP K+I FL + + GY
Sbjct: 491 LTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 328 LRSAS*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 164
L A I M + + +DA + H + + + + +RP K+I FL + + GY
Sbjct: 491 LTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 69 RGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 164
+G+ + LP RF+T+L AL T+ NS M
Sbjct: 321 KGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
protein F35G12.8 protein.
Length = 1549
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 172 HGYIGEFEIVDDHRAGKIVVNLTGRLN 92
HG +G+ ++D G I N RLN
Sbjct: 622 HGRLGDLGVIDPKYEGAICTNFGARLN 648
>U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical
protein C26B9.6 protein.
Length = 306
Score = 25.8 bits (54), Expect = 7.7
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = +3
Query: 69 RGEMTPHLFSLPVRF 113
RG+++P LFS+P+R+
Sbjct: 146 RGKISPSLFSMPIRY 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,734,902
Number of Sequences: 27780
Number of extensions: 115943
Number of successful extensions: 280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -