Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K05
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   0.73 
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    27   1.3  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   2.2  
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    25   3.9  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.0  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 358 MHPTCPMRAVPSTTTTSCQKQCEPHVQNLIFKSYIM----KLTTELTLFQATSDRI 203
           +HP      + S  T S QK+ +  ++NL+F S       K  T + L Q++S ++
Sbjct: 345 VHPVSTYYTMLSNFTLSLQKEIDERIRNLLFVSLSSGGDNKNDTGIPLIQSSSSKV 400


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 292 EPHVQNLIFKSYIMKLTTELTLFQATSDRIYAL 194
           EP ++  +FKS+   +  E  ++ +  DR+ AL
Sbjct: 126 EPEIKTEVFKSFFNSMPKEFEVWMSHGDRLSAL 158


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 180 YLTHFILVPLCVHSSNNSTKLASAFFFELSSNKS 79
           YL   ++VPLC +   + TKL      +L   K+
Sbjct: 635 YLYFSLMVPLCKYDGLSDTKLTEGILLKLKDLKT 668


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -1

Query: 225 FKQQVIEYTR*SHNKYLTHFILVPLCVHSSNNSTKLASAFFFELSSNKSKXN 70
           F +++      S  K LTH  +   C+H++ N  +  S    E+++  +  N
Sbjct: 191 FLKEISNSNNISLAKMLTHLNIRAFCLHNAGNDARYTSEALREMTNKFTLSN 242


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 265 KSYIMKLTTELTLFQATSDRIYALVTQ*IFDTFHISA 155
           K+YI+ L+T L ++   +   Y  V   + + +H+S+
Sbjct: 80  KAYIVLLSTSLQMYVFWTPNFYPGVQDSVMELWHLSS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,940
Number of Sequences: 5004
Number of extensions: 19036
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)