Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K05
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    29   1.4  
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    29   1.4  
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    27   3.3  

>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 346 CPMRAVPSTTTTSCQKQC-EP 287
           CP+ A PST T+SC   C EP
Sbjct: 489 CPLNAHPSTCTSSCPSTCAEP 509


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 346 CPMRAVPSTTTTSCQKQC-EP 287
           CP+ A PST T+SC   C EP
Sbjct: 501 CPLNAHPSTCTSSCPSTCAEP 521


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 346 CPMRAVPSTTTTSCQKQC-EP 287
           CP+ A PST T+SC   C EP
Sbjct: 489 CPLNAHPSTCTSSCPSTCAEP 509


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 346 CPMRAVPSTTTTSCQKQC-EP 287
           CP+ A PST T+SC   C EP
Sbjct: 501 CPLNAHPSTCTSSCPSTCAEP 521


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 278 LYVWLTLLLARCCCGGRDCSHRTC 349
           LY ++T+L A CCC G+D + +TC
Sbjct: 547 LYFFMTILCA-CCCKGKDHA-KTC 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,805,441
Number of Sequences: 27780
Number of extensions: 109826
Number of successful extensions: 360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)