Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K05
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.67 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 336  EQSLPPQQHRARSSVSHTYK 277
            +Q LPP   + R +V+H Y+
Sbjct: 1282 QQQLPPSSPQPRLTVNHAYR 1301


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 338 ESSPFHHNNIVPEAV*ATRTK 276
           +S  FHH+N  P     TR K
Sbjct: 116 KSVVFHHDNARPHTSLVTRQK 136


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 352  PTCPMRAVPSTTTTSCQKQCEPH 284
            P  P   + +TTT S   +  PH
Sbjct: 1367 PHSPQITLTATTTNSLTMKVRPH 1389


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 326 FHHNNIVPEAV*ATRTK 276
           FHH+N  P     TR K
Sbjct: 242 FHHDNARPHTSLVTRQK 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,873
Number of Sequences: 438
Number of extensions: 1175
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)