Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K03
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    49   8e-07
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    48   1e-06
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    40   5e-04
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    29   0.72 
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    29   0.96 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   6.7  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   8.9  

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 26/63 (41%), Positives = 34/63 (53%)
 Frame = -2

Query: 751 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 572
           D  V + KIDAT ND   S   +SGFPTI +   +    P RY G R LED   ++ + A
Sbjct: 405 DSNVVVAKIDATENDISVS---ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHA 461

Query: 571 TSE 563
           + E
Sbjct: 462 SFE 464



 Score = 33.1 bits (72), Expect = 0.044
 Identities = 15/68 (22%), Positives = 37/68 (54%)
 Frame = -2

Query: 760 KLKDEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVS 581
           +L+ + + ++++D T      S++ + G+PT+      + K+  +Y+G R  +  +KY+ 
Sbjct: 67  ELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL--NVFKNGKQISQYSGPRKHDALVKYMR 124

Query: 580 EQATSELK 557
           +Q    +K
Sbjct: 125 KQLLPTVK 132


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = -2

Query: 751 DEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 572
           +  V+I+KI+A          +V+ FPTI + PKD   KP+ Y G R+LE  I+Y+++++
Sbjct: 190 EPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKS 249

Query: 571 TSE 563
            ++
Sbjct: 250 GTQ 252



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 35/57 (61%)
 Frame = -2

Query: 745 EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 575
           +V I KIDA  +     ++ ++GFPT+ W P D S +P +Y+  R ++   ++VSE+
Sbjct: 73  DVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGS-EPVQYSNARDVDSLTQFVSEK 128


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 742 VDIIKIDATANDWPKSQFDVSGFPTI---FWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 572
           V  +  DA  N    SQ+ V GFPTI   +   K SS     YNG R+ +   K+VS+  
Sbjct: 83  VTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSI 142

Query: 571 TSELK 557
            S++K
Sbjct: 143 PSKVK 147


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 40  HNFNYXRTSQLMSLIYHPQVXVXQYTTYANTSXFYKNVYYFLTKRSKML--SYIC 198
           H     +T   +SL  H    +   T Y N    YK++YYFL +   +   SYIC
Sbjct: 21  HRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYYFLMRIVFIASESYIC 75


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 327 LQEERQCLSTQRMLFISAFPWSDITHINSEVIFHCFSHYIHP 452
           + E R   +    +F   FP   +  +N +V+ HC SH   P
Sbjct: 592 ISEHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 661 WKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKG 539
           W+  D  + P++YN    LE + KY    AT+ L+G    G
Sbjct: 112 WQ-SDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRGIQNLG 151


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 688 DVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 557
           +VS FP I  + + SSK P++ +    LE  IK+VS    + ++
Sbjct: 465 NVSDFPQIVEQEELSSKNPRKVHFSDTLE--IKHVSRSGKANIE 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,557
Number of Sequences: 5004
Number of extensions: 64536
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)