Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K02
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    27   4.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.2  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    26   6.9  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   9.2  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   9.2  

>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +3

Query: 516 PGDRVAGEHQSPYP---GVPGHQ---HHVRHSYGQLKHVVRILDVP 635
           PG  V  +H SPYP   G PGH+   H   + Y Q      +  VP
Sbjct: 201 PGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYPQRATSPSLKQVP 246


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 255 QYYYFYVYLASSQKLIGNGLPVRG-VSVLCGFRFPDLSEQFPSIR 386
           +Y+ F+V L S +K+  NGLP    V  + G    D S +    R
Sbjct: 62  EYFAFWVELISRKKVTNNGLPFSSFVKSIVGILEVDASNEILCFR 106


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 662 NPMRQHPSVEQARXSH*YHHGSLPSPARPSVAPQ 763
           NP R+ P+ +QA   H  +  +LP P  PS+ P+
Sbjct: 276 NPYRR-PTAQQALEHH--YFSALPKPTHPSLLPR 306


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +3

Query: 189 IFCYNTFYWWLHVKRSQCSTCYQYYYFYVYLA 284
           +F ++ FYW+  +  S  +T   Y+ + + ++
Sbjct: 569 VFIFSVFYWFFKISSSSLATAVLYFGYSLLIS 600


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 370 SSHPFAFSVDVTYVFFGSC--SRVYAPKIKL 456
           SS PF FS+++  + F  C  S V+ P +K+
Sbjct: 156 SSVPFEFSIEIGVISFCRCKPSLVFPPHLKI 186


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 513 PPGDRVAGEHQSPYPGVPG--HQHHVRHSYGQLKHVVRIL 626
           P  D   GE+  P P VPG   Q+   H   +L H +R L
Sbjct: 80  PNNDISVGEYVEPLPSVPGWLKQNIFSHFGTRLLHYLRSL 119


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 640 SITPDMR*SDAPASFGRTSTXISLISPWITPFSSSSKRGTTAY 768
           S+ P +  SD P     +ST  + +SP   P SS  K   ++Y
Sbjct: 301 SMEPCIAESDIPIRQSLSSTYYNSLSPNAVPVSSQRKYSASSY 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,301
Number of Sequences: 5004
Number of extensions: 73685
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)