Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K02
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical p...    36   0.032
Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical p...    36   0.032
AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF003383-3|ABO16467.1|  438|Caenorhabditis elegans Cyclophylin p...    30   2.1  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere...    28   8.6  
AC006680-9|AAK72299.1|  353|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical
           protein K07F5.4b protein.
          Length = 474

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 421 TRKTRMSRPLRRRMDGNCSERSGKRNPQRTETPRTGRPLPM 299
           + K R  +   ++  GN   RSGKR P++ E+P++ +P+P+
Sbjct: 421 SEKNRKVKGGSKKKTGNRHNRSGKRTPKQEESPKSKKPVPL 461


>Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical
           protein K07F5.4a protein.
          Length = 517

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 421 TRKTRMSRPLRRRMDGNCSERSGKRNPQRTETPRTGRPLPM 299
           + K R  +   ++  GN   RSGKR P++ E+P++ +P+P+
Sbjct: 464 SEKNRKVKGGSKKKTGNRHNRSGKRTPKQEESPKSKKPVPL 504


>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 453 TLDQTSRDQGLQ*SVLFIRQPPGDRVAGEHQSPYPGVPGHQH 578
           TLDQ +       + +F++ P   R A +H  P PGVP H H
Sbjct: 122 TLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVP-HSH 162


>AF003383-3|ABO16467.1|  438|Caenorhabditis elegans Cyclophylin
           protein 17 protein.
          Length = 438

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -2

Query: 512 LPDEEYRLLKTLISARLVQSLILGAYTLEQDPKNTYVTSTEKANGWELLRKIRKTKPT 339
           +P+EE  +  T    R V+ ++    T  Q P      +T KAN W+      K KPT
Sbjct: 244 IPEEEEEITTTTRKTRPVKKVV---NTFRQKPTPAPEVTTTKANIWDKFTVGNKAKPT 298


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 513 PPGDRVAGEHQSPYPGVPGH 572
           PPG     +H  PYPG PG+
Sbjct: 717 PPGPPGPQQHPGPYPGYPGY 736


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical protein
            F56G4.1 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +3

Query: 39   VIISVSTRVFRHYKT*CSYLITETYYCVKT*LLLDYTLKINDITFLTQKQIFCYNTFYWW 218
            ++ S STRVF      CS LI     C+   L++  +  + + TFL Q + F +   ++ 
Sbjct: 888  ILTSKSTRVFLKKWFECSLLII----CLIWTLVILASQMMEEDTFLCQNKFFAFLITFFT 943

Query: 219  LHVKRSQCSTCYQYY 263
            L V        Y YY
Sbjct: 944  LMVLALVLRVSYMYY 958


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical protein
            F56G4.1 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +3

Query: 39   VIISVSTRVFRHYKT*CSYLITETYYCVKT*LLLDYTLKINDITFLTQKQIFCYNTFYWW 218
            ++ S STRVF      CS LI     C+   L++  +  + + TFL Q + F +   ++ 
Sbjct: 888  ILTSKSTRVFLKKWFECSLLII----CLIWTLVILASQMMEEDTFLCQNKFFAFLITFFT 943

Query: 219  LHVKRSQCSTCYQYY 263
            L V        Y YY
Sbjct: 944  LMVLALVLRVSYMYY 958


>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
           protein K08H10.7 protein.
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 428 EQDPKNTYVTSTEKANGWELLRKIRKTKPTENGDPT 321
           + +PK T++   +K +   LLR++ K KP  N D T
Sbjct: 834 DPEPKYTFIV-IQKRHNTRLLRRMEKDKPVVNKDLT 868


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 424 KTRKTRMSRPLRRRMD----GNCSERSGKRNPQRTETPR 320
           K +K +       RMD    G  S++S KR+P R+E+PR
Sbjct: 672 KEKKKKKKHSKEDRMDDEERGKKSKKSRKRSPSRSESPR 710


>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
           promoting factorRDE-1 protein.
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 428 EQDPKNTYVTSTEKANGWELLRKIRKTKPTENGDPT 321
           + +PK T++   +K +   LLR++ K KP  N D T
Sbjct: 834 DPEPKYTFIV-IQKRHNTRLLRRMEKDKPVVNKDLT 868


>AC006680-9|AAK72299.1|  353|Caenorhabditis elegans Hypothetical
           protein R13D7.2 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 144 YTLKINDITFLTQKQIFCYNTFYWWLHVKRSQCSTCYQYY 263
           Y  K     F   K   C N  Y  +++  + CS  YQY+
Sbjct: 98  YEQKCEKDEFRNYKMTNCVNKLYDSIYLNSNNCSKAYQYF 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,590,243
Number of Sequences: 27780
Number of extensions: 429647
Number of successful extensions: 1288
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)