Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_K02
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   7.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.7  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 442 ARTLWNKTRKTRMSRPLRRRMDGNCSERSGKRNPQRTETPRTGRP 308
           +R  ++++R+         R      ERS +R+  RTE  R+  P
Sbjct: 35  SRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREP 79


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 442 ARTLWNKTRKTRMSRPLRRRMDGNCSERSGKRNPQRTETPRTGRP 308
           +R  ++++R+         R      ERS +R+  RTE  R+  P
Sbjct: 35  SRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREP 79


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 442 ARTLWNKTRKTRMSRPLRRRMDGNCSERSGKRNPQRTETPRTGRP 308
           +R  ++++R+   +     R      ERS +R+  RTE  R+  P
Sbjct: 268 SRKRYSRSREREQNSYKNEREYRKYRERSKERSRDRTERERSREP 312


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 201 NTFYWWLHVKRSQ 239
           N FYW+ ++ RS+
Sbjct: 439 NVFYWFAYLSRSE 451


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 314 SSPWGLRSLWVSFS*SFGAVPIHSPSQWT*HTCFSGLV 427
           S P   RSL  S+  S G  P+ S S    HT F G +
Sbjct: 55  SVPQPPRSLEGSYDSSSGDSPVSSHSSNGIHTGFGGSI 92


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 185 TNFLLQYFLLVASC 226
           T  LL +FLL++SC
Sbjct: 3   TRILLLFFLLLSSC 16


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 185 TNFLLQYFLLVASC 226
           T  LL +FLL++SC
Sbjct: 3   TRILLLFFLLLSSC 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,566
Number of Sequences: 438
Number of extensions: 5433
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)