Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J23
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    32   0.45 
AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...    31   0.60 
U23517-5|AAB93339.2|  425|Caenorhabditis elegans Serpentine rece...    30   1.4  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    30   1.8  

>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 658 HHGAYGLMHTPNRRSVILLNHPRQKKNVTKFQRYMGL 548
           H  A  L   P RR+   LNH ++ K +  F+R++ L
Sbjct: 32  HEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFLDL 68


>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 658 HHGAYGLMHTPNRRSVILLNHPRQKKNVTKFQRYMG 551
           H  A  L   P RR+   LNH ++ K +  F+R+ G
Sbjct: 32  HEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHG 67


>U23517-5|AAB93339.2|  425|Caenorhabditis elegans Serpentine
           receptor, class o (opsin)protein 1 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 90  THSWSRWRCESVFF*L*IYLKIKINCKKYIPT 185
           T  W +WRC S +F L  +  I +    ++PT
Sbjct: 157 TPKWGKWRCNSNYFKLIFFGAIAVGLWSFVPT 188


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -2

Query: 232 NTKFNLRYH*LISIIQVGMYFLQLILI 152
           +T+F +RY  L+  I++G Y+L+L+LI
Sbjct: 818 HTEFQIRYPSLLEEIKIGDYYLRLLLI 844


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -2

Query: 232 NTKFNLRYH*LISIIQVGMYFLQLILI 152
           +T+F +RY  L+  I++G Y+L+L+LI
Sbjct: 818 HTEFQIRYPSLLEEIKIGDYYLRLLLI 844


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -2

Query: 232 NTKFNLRYH*LISIIQVGMYFLQLILI 152
           +T+F +RY  L+  I++G Y+L+L+LI
Sbjct: 818 HTEFQIRYPSLLEEIKIGDYYLRLLLI 844


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,716
Number of Sequences: 27780
Number of extensions: 268809
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)