Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J21
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.68 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.89 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.89 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 622 IWGRHFSTEFLISCVFSEV*SINEWR 545
           +WGR     FL SC F  +   NE R
Sbjct: 184 VWGRFVPEGFLTSCSFDYLTDTNEIR 209


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 369 LAKIKCYNIISYYYGL*LDLKFLVFMEIYFV 277
           + KIK  NII  Y  +   + F++F  IY++
Sbjct: 455 MPKIKDVNIIDKYSRIIFPVSFMLFNAIYWI 485


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 466 RNVVDTRKSISFRGSLHITQSQTRNLNAIHLYFKPPKIHTKL 591
           R  +D  KS     +L ++  + +N++ +HL F PP I  +L
Sbjct: 436 RRRMDKLKSSIEEANLAVSAEREKNVSLLHLIF-PPDIAKRL 476


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 536 ETSTPFIYTSNLRKYTR 586
           ET  PF+YT N+ K T+
Sbjct: 931 ETGLPFVYTFNVIKLTK 947


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 622 IWGRHFSTEFLISCVF 575
           +WGR+ +  FL +C F
Sbjct: 193 VWGRYTTEGFLTTCSF 208


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 524 NLKRETSTPFIYTSNLRKYTRN*KFSREMSPPNNLFGMHL 643
           + +R TS+ F+Y     KYT N       S  + + GM L
Sbjct: 219 SFQRLTSSTFVYDPRYTKYTIN---DESFSLQDGILGMAL 255


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 622 IWGRHFSTEFLISCVF 575
           +WGR+ +  FL +C F
Sbjct: 193 VWGRYTTEGFLTTCSF 208


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 683 CKSMXYFRMAVSYLSAY 633
           C+ M +FRM   YLS++
Sbjct: 111 CRIMAFFRMFGLYLSSF 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,826
Number of Sequences: 438
Number of extensions: 3352
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)