Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J19
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    28   0.83 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   4.4  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   5.8  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    25   5.8  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   7.7  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.7  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   7.7  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   7.7  

>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 138 KQLSNLTLTTEHRWYPRARD 79
           K L+NL LTT   WYP   D
Sbjct: 225 KNLNNLNLTTNSHWYPCGPD 244


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 117 LTTEHRWYPRARDKKAKKTEMN 52
           L +  RW  RARD+K +K   N
Sbjct: 23  LKSSRRWTDRARDRKRQKRNSN 44


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 375 YLTRKIALIPRVALSRFYNXIVIXDDGSTIVALHQDYDFPYEHSRALPEETS 220
           YL  K   +P V +    N IV   DG+ I+AL+       +H R + +  S
Sbjct: 197 YLKAKELHLPLVHIFNVENEIVENCDGNHILALNFSLQTLLQHGRIVRKSNS 248


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 382 NVLFNSQNSINPKSGIK 332
           N +FNSQNS+ P+  I+
Sbjct: 217 NTIFNSQNSLTPQKKIQ 233


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 213 NTVLKMTDLDEVKRVFXXMKPEFARKQLSNLTLTTEHRWYPRARDKKAKKTEMN 52
           +T  ++ D  E+ +     + E   KQLSN     EH  + R +  +A K  M+
Sbjct: 313 STNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMD 366


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 270 DYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRV 169
           DY   +EH   + E + KD  + K+   +E+ RV
Sbjct: 234 DYHNTFEHICKILENSVKDKFIEKLVSKEELTRV 267


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 204 LKMTDLDEVKRVFXXMKPEFARKQLSNLTLTTEH---RWYPRARDKKAKKTEMN 52
           L+M DL ++ R       E +RK L+       H   RWYP+     ++K+  N
Sbjct: 92  LQMEDLQQLSR-------ETSRKSLNRRVSFASHARVRWYPKDHQSDSEKSTSN 138


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = -3

Query: 264 DFPYEHSRALPEETSKDNTVLKMTDLDE-------VKRVFXXMKPEFARKQLSNLTLTTE 106
           D PY+  R L +E      V+ MTD  E       V R F    P++  +  S   +  +
Sbjct: 199 DIPYDPFRKLSDENKAYGFVISMTDYYETLPSLWNVTRDFIHQNPQYLAQNNSLDFIVND 258

Query: 105 HR 100
           H+
Sbjct: 259 HQ 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,990
Number of Sequences: 5004
Number of extensions: 23822
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)