Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J19
         (470 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533495-1|CAG38526.1|  142|Homo sapiens MRPL42 protein.               54   3e-07
BC040240-1|AAH40240.1|  142|Homo sapiens mitochondrial ribosomal...    54   3e-07
AK000285-1|BAA91054.1|  142|Homo sapiens protein ( Homo sapiens ...    54   3e-07
AF135160-1|AAF43784.1|  142|Homo sapiens unknown protein.              54   3e-07
AB051626-1|BAB54953.1|   51|Homo sapiens mitochondrial ribosomal...    31   1.5  
AK098126-1|BAC05240.1|  133|Homo sapiens protein ( Homo sapiens ...    29   8.1  

>CR533495-1|CAG38526.1|  142|Homo sapiens MRPL42 protein.
          Length = 142

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = -3

Query: 315 IVIXDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFXXMKPEFAR- 139
           + +  DG TIV  H   D PYEH++ +P      N   + T  D+V +     K E    
Sbjct: 49  LALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLEE 105

Query: 138 ----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 46
               +QLS +  TT+HRWYP  R  + +K  +N P
Sbjct: 106 GPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139


>BC040240-1|AAH40240.1|  142|Homo sapiens mitochondrial ribosomal
           protein L42 protein.
          Length = 142

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = -3

Query: 315 IVIXDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFXXMKPEFAR- 139
           + +  DG TIV  H   D PYEH++ +P      N   + T  D+V +     K E    
Sbjct: 49  LALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLEE 105

Query: 138 ----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 46
               +QLS +  TT+HRWYP  R  + +K  +N P
Sbjct: 106 GPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139


>AK000285-1|BAA91054.1|  142|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20278 fis, clone HEP03158. ).
          Length = 142

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = -3

Query: 315 IVIXDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFXXMKPEFAR- 139
           + +  DG TIV  H   D PYEH++ +P      N   + T  D+V +     K E    
Sbjct: 49  LALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLEE 105

Query: 138 ----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 46
               +QLS +  TT+HRWYP  R  + +K  +N P
Sbjct: 106 GPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139


>AF135160-1|AAF43784.1|  142|Homo sapiens unknown protein.
          Length = 142

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = -3

Query: 315 IVIXDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFXXMKPEFAR- 139
           + +  DG TIV  H   D PYEH++ +P      N   + T  D+V +     K E    
Sbjct: 49  LALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLEE 105

Query: 138 ----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 46
               +QLS +  TT+HRWYP  R  + +K  +N P
Sbjct: 106 GPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139


>AB051626-1|BAB54953.1|   51|Homo sapiens mitochondrial ribosomal
           protein L42 protein.
          Length = 51

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 138 KQLSNLTLTTEHRWYPRAR 82
           +QLS +  TT+HRWYP  R
Sbjct: 33  EQLSKMFFTTKHRWYPHGR 51


>AK098126-1|BAC05240.1|  133|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40807 fis, clone TRACH2009268. ).
          Length = 133

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 315 IVIXDDGSTIVALHQDYDFPYEHSR 241
           + +  DG TIV  H   D  YEH++
Sbjct: 91  LAVISDGRTIVCYHHSVDISYEHTK 115


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,332,922
Number of Sequences: 237096
Number of extensions: 771265
Number of successful extensions: 1378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)