Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_J19
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68270-9|CAE54911.1| 307|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z68270-8|CAC35869.1| 309|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z68270-7|CAA92571.2| 109|Caenorhabditis elegans Hypothetical pr... 38 0.005
AF202930-1|AAK69380.1| 109|Caenorhabditis elegans Ny protein. 38 0.005
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 30 0.96
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 30 0.96
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 28 3.9
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 28 3.9
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 27 5.1
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 27 5.1
Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z68270-9|CAE54911.1| 307|Caenorhabditis elegans Hypothetical
protein ZC410.7c protein.
Length = 307
Score = 37.5 bits (83), Expect = 0.005
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -3
Query: 345 RVALSRFYNXIVIXDDGSTIVALHQDYDFPYEHSRA--LPEETSKDNTVLKMTDLDEVKR 172
R A S +V+ +G TI A H FPYEH++ L T KD + + L +
Sbjct: 11 RFASSDSPRKVVVCANG-TIAAWHPPQHFPYEHTKPIDLGSLTKKDQS----SRLSAAAK 65
Query: 171 VFXXMKPEFARKQLSNLTLTTEHRWYPRARDKKAK 67
+ E +L ++ T++H WY R R+++ +
Sbjct: 66 A-SSIPREPVNAELKDIFYTSKHEWYSRTREERLR 99
>Z68270-8|CAC35869.1| 309|Caenorhabditis elegans Hypothetical
protein ZC410.7b protein.
Length = 309
Score = 37.5 bits (83), Expect = 0.005
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -3
Query: 345 RVALSRFYNXIVIXDDGSTIVALHQDYDFPYEHSRA--LPEETSKDNTVLKMTDLDEVKR 172
R A S +V+ +G TI A H FPYEH++ L T KD + + L +
Sbjct: 11 RFASSDSPRKVVVCANG-TIAAWHPPQHFPYEHTKPIDLGSLTKKDQS----SRLSAAAK 65
Query: 171 VFXXMKPEFARKQLSNLTLTTEHRWYPRARDKKAK 67
+ E +L ++ T++H WY R R+++ +
Sbjct: 66 A-SSIPREPVNAELKDIFYTSKHEWYSRTREERLR 99
>Z68270-7|CAA92571.2| 109|Caenorhabditis elegans Hypothetical
protein ZC410.7a protein.
Length = 109
Score = 37.5 bits (83), Expect = 0.005
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -3
Query: 345 RVALSRFYNXIVIXDDGSTIVALHQDYDFPYEHSRA--LPEETSKDNTVLKMTDLDEVKR 172
R A S +V+ +G TI A H FPYEH++ L T KD + + L +
Sbjct: 11 RFASSDSPRKVVVCANG-TIAAWHPPQHFPYEHTKPIDLGSLTKKDQS----SRLSAAAK 65
Query: 171 VFXXMKPEFARKQLSNLTLTTEHRWYPRARDKKAK 67
+ E +L ++ T++H WY R R+++ +
Sbjct: 66 A-SSIPREPVNAELKDIFYTSKHEWYSRTREERLR 99
>AF202930-1|AAK69380.1| 109|Caenorhabditis elegans Ny protein.
Length = 109
Score = 37.5 bits (83), Expect = 0.005
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -3
Query: 345 RVALSRFYNXIVIXDDGSTIVALHQDYDFPYEHSRA--LPEETSKDNTVLKMTDLDEVKR 172
R A S +V+ +G TI A H FPYEH++ L T KD + + L +
Sbjct: 11 RFASSDSPRKVVVCANG-TIAAWHPPQHFPYEHTKPIDLGSLTKKDQS----SRLSAAAK 65
Query: 171 VFXXMKPEFARKQLSNLTLTTEHRWYPRARDKKAK 67
+ E +L ++ T++H WY R R+++ +
Sbjct: 66 A-SSIPREPVNAELKDIFYTSKHEWYSRTREERLR 99
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 29.9 bits (64), Expect = 0.96
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 222 SKDNTVLKMTDLDEVKRVFXXMKPEFARKQLSNLTLTTEHRWYPRARDKKAK 67
+KD +L LD K+VF ++ + +S+LT H WYP AR K
Sbjct: 139 TKDCEMLYPFFLDHAKQVFPHLEAMDDLRIISDLT--RPHNWYPEARSVTRK 188
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 29.9 bits (64), Expect = 0.96
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 222 SKDNTVLKMTDLDEVKRVFXXMKPEFARKQLSNLTLTTEHRWYPRARDKKAK 67
+KD +L LD K+VF ++ + +S+LT H WYP AR K
Sbjct: 141 TKDCEMLYPFFLDHAKQVFPHLEAMDDLRIISDLT--RPHNWYPEARSVTRK 190
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = -3
Query: 279 LHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFXXMKPEFARKQLSNLTLTTEHR 100
+ +DYD YE + + +D +LK E + F K ++ T ++R
Sbjct: 390 IKEDYDELYEKLKRDQRDLERDQKILK-KGTGERNKEFTETIATLRDKLRASETKNAQYR 448
Query: 99 WYPRARDKKAKKTE 58
R RD+K KK +
Sbjct: 449 QDIRVRDEKLKKKD 462
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = -3
Query: 279 LHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFXXMKPEFARKQLSNLTLTTEHR 100
+ +DYD YE + + +D +LK E + F K ++ T ++R
Sbjct: 390 IKEDYDELYEKLKRDQRDLERDQKILK-KGTGERNKEFTETIATLRDKLRASETKNAQYR 448
Query: 99 WYPRARDKKAKKTE 58
R RD+K KK +
Sbjct: 449 QDIRVRDEKLKKKD 462
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
homolog protein.
Length = 1257
Score = 27.5 bits (58), Expect = 5.1
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = -3
Query: 354 LIPRVALSRFYNXIVIXDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVK 175
LI L YN + + +G + Q + LPE LK+ DL E +
Sbjct: 315 LIQLTVLHLSYNKLELVPEGISRCVKLQKLKLDHNRLITLPEGIHLLPD-LKVLDLHENE 373
Query: 174 RVFXXMKPEFARKQLS--NLTLTTEHR 100
+ KP ARK+L+ N+ + EH+
Sbjct: 374 NLVMPPKPNDARKKLAFYNIDFSLEHQ 400
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 27.5 bits (58), Expect = 5.1
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = -3
Query: 354 LIPRVALSRFYNXIVIXDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVK 175
LI L YN + + +G + Q + LPE LK+ DL E +
Sbjct: 315 LIQLTVLHLSYNKLELVPEGISRCVKLQKLKLDHNRLITLPEGIHLLPD-LKVLDLHENE 373
Query: 174 RVFXXMKPEFARKQLS--NLTLTTEHR 100
+ KP ARK+L+ N+ + EH+
Sbjct: 374 NLVMPPKPNDARKKLAFYNIDFSLEHQ 400
>Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 270 DYDFPYEHSRALPEETSKDNTVLKM 196
D D PY+ PE+TSK+ T KM
Sbjct: 302 DIDSPYDWELQKPEKTSKEPTSSKM 326
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = -3
Query: 309 IXDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFXXMKPEFARKQL 130
+ +D + + + Y FPY + P ++D T++ L + V + P L
Sbjct: 1783 VYEDKNLTLITERWYSFPYNYRPFRPYRITRDVTIMPGATLYIEQNVEVHVWPNVRILVL 1842
Query: 129 SNLTLTTEHRWYPRARDKKAKKTE 58
NL E+ W P R K TE
Sbjct: 1843 GNLVARGEY-WQP-IRFKPINVTE 1864
>Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 270 DYDFPYEHSRALPEETSKDNTVLKM 196
D D PY+ PE+TSK+ T KM
Sbjct: 302 DIDSPYDWELQKPEKTSKEPTSSKM 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,236,611
Number of Sequences: 27780
Number of extensions: 127935
Number of successful extensions: 297
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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