Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J18
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   9.8  
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422...    27   9.8  

>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 192  FHTISGSQSRLTN*KKKLDFGFSSV*LNSFCNSIHSISYI 311
            F ++SG    L    ++L+  + S+   SFC ++ S+ Y+
Sbjct: 1737 FESLSGQGYELCPRLERLEINYPSILTTSFCKNLTSLQYL 1776


>01_03_0076 -
           12241408-12241545,12241719-12241790,12242173-12242289,
           12243307-12245127,12245361-12245810
          Length = 865

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 599 HLPCSVFAPPIPPEAPVKE 543
           HLP S  APP PP  P +E
Sbjct: 122 HLPSSAAAPPPPPPPPPEE 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,319
Number of Sequences: 37544
Number of extensions: 250422
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)