Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J18
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical
           protein R03H4.1 protein.
          Length = 642

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
 Frame = +1

Query: 184 DGFFIQLAVVKAVSLIRKRN*ILVFPQFN*IVFATLFILFHTYCNDKLSISK*CYTIGSK 363
           D   I +AV+    +  K + +++ P    +  AT  I+   Y N+++  SK    IG  
Sbjct: 237 DMVIILIAVIGLCFIPTKLDVLILRPL---VTTATALIIGCEYHNNQILKSKILGYIGDI 293

Query: 364 KYYTIVYRQVAISKMIGIAVVIFI---KLQLLTAYLFHNCFKKIYLYL 498
            Y   +     I+  +   V  +I    L +L++ + H+ F+K+YL L
Sbjct: 294 SYVMYLVHWPIITIFLSNTVKSYIFCTSLTILSSVVLHHTFEKLYLKL 341


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 352 IGSKKYYTIVYRQVAISKMIGIAV---VIFIKLQLLTAYLFHNCFKKIYLYL*SEKVL 516
           +G   Y   +     IS + G  +   V  + L LL + + H+CF+K YL L  + V+
Sbjct: 273 LGDISYVVYLVHWPVISLLKGSTIQSQVYCVALTLLISVIVHHCFEKQYLQLGIKSVI 330


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 352 IGSKKYYTIVYRQVAISKMIGIAV---VIFIKLQLLTAYLFHNCFKKIYLYL*SEKVL 516
           +G   Y   +     IS + G  +   V  + L LL + + H+CF+K YL L  + V+
Sbjct: 273 LGDISYVVYLVHWPVISLLKGSTIQSQVYCVALTLLISVIVHHCFEKQYLQLGIKSVI 330


>Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57G11C.7 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 427 IFIKL-QLLTAYLFHNCFKKIYLYL*SEKVL*SHYIQ 534
           IFIK+ +  T   ++ CFK+I L   SEK    H++Q
Sbjct: 238 IFIKICRNKTKNNYNKCFKRIQLNFQSEKSFLGHFLQ 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,213
Number of Sequences: 27780
Number of extensions: 256768
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)