Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J13
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 441 NCVLFITHGGLLSTTEALHY 382
           NC++F+    ++ST   L+Y
Sbjct: 299 NCIMFMVASSVVSTILILNY 318


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 519  EEDLDGLPNNVHIVSWAPQ 463
            EED+ G P ++ +V  +PQ
Sbjct: 1210 EEDVPGSPADIKVVVSSPQ 1228


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 519  EEDLDGLPNNVHIVSWAPQ 463
            EED+ G P ++ +V  +PQ
Sbjct: 1206 EEDVPGSPADIKVVVSSPQ 1224


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 414 GLLSTTEALHYGVPIIGIPVF 352
           GLLS +  + YG+ +  +P+F
Sbjct: 210 GLLSASYLVCYGIWVYFVPLF 230


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 365 GSQFLPTNFSTSKEQPQKDLPSKLTLT 285
           G Q   T     K +  +DLP K T+T
Sbjct: 109 GIQINATELQKIKLEIHRDLPGKSTIT 135


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 140 TCSTQWTSSAPGDTGRSW*TSDSCLMFSRYLELFKISSIANF 265
           TCS Q        TG    T D C     Y  + K+  +A++
Sbjct: 214 TCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHY 255


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 414 GLLSTTEALHYGVPIIGIPVF 352
           GLLS +  + YG+ +  +P+F
Sbjct: 86  GLLSASYLVCYGIWVYFVPLF 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,421
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)