Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_J10
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 33 0.046
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 30 0.25
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 28 1.00
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 28 1.3
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 27 3.0
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa... 26 5.3
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 5.3
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.3
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 7.0
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 7.0
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.0
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 25 7.0
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 9.3
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 32.7 bits (71), Expect = 0.046
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -1
Query: 379 IGEYSIAYLEARMKRMEDILLNKIDQNSQRIVELKNTVVRSK 254
+GE+S+ Y+ RME N + NS +I++LKN +++ K
Sbjct: 144 VGEHSVIYVSNNSIRME----NTLHDNSVQIIDLKNNILQKK 181
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = -1
Query: 472 TNLENIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQ--- 302
T L+ +++TKI + S+V SSL+ N P + S + R++R + + +Q
Sbjct: 101 TLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPKKSRNRQKERLERRKAEMKKMSEQAEL 160
Query: 301 NSQRIVELKN 272
S+++ +LKN
Sbjct: 161 ESEKMADLKN 170
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.3 bits (60), Expect = 1.00
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 415 TSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQ 302
TS+L PN I +Y L R++R + I +NK+ Q
Sbjct: 198 TSTLGYTPNASGISQYHALGLLYRIRRHDSIAMNKLLQ 235
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 1.3
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Frame = -1
Query: 469 NLENIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRME-----DILLN-KI 308
NL+N+KN ++L +N+ ++ +L G ++ +++ R++R+E D L N ++
Sbjct: 99 NLDNVKNLTYLDLSFNNI-KTIRNINHLK--GLENLFFVQNRIRRIENLEGLDRLTNLEL 155
Query: 307 DQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKK 203
N R++E +T+V +K V E ++K
Sbjct: 156 GGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEK 190
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -1
Query: 448 TKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNK 311
T ++ELKN +T K+ +P + ++ +MK+ + I + K
Sbjct: 217 THVLELKNKKITYQGPKEQYIPMTSHSTNIPVKPQMKKSKPITIGK 262
>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 168 PIATA*FTKNFSLVNMRKNHVKFLHRLKNVAKGNDSHKCYERFMKINV 25
PIA KNF++ L L NV KGN C E ++NV
Sbjct: 259 PIADNFPLKNFAVPVEVVERASGLEILSNVPKGNRKQLCSEVVCQLNV 306
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 460 NIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAY-LEARMKRMEDI 323
N+ NT+I++L N S K PN S +Y E + K+++++
Sbjct: 11 NLFNTRIVQLDNYVTRLSTEKSPNTEITQALSSSYEAEEKAKQLKEL 57
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = -1
Query: 445 KIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQNSQRIVELKNTV 266
KI E K N ++SLS DP + S + K ++ +D S+ NT+
Sbjct: 295 KIRETKKKNSSTSLSPDPTSDNFEWGSWVSSQDTSKNSSNLASASVDDVSEESQVEPNTL 354
Query: 265 VRSKKKSVHTQTAHTDET 212
+ S T + +T
Sbjct: 355 IFQNFSSPSTSLSAPKDT 372
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 178 ILIFHCRGTSCKFRQCELFEYGLIFFLNAQLYFLVQQFVENSDLSY*VICLPFFSF 345
I I H RGT + ++E ++ + +L V+ V++ Y +I P F F
Sbjct: 540 ICIMHMRGTPETMKALSIYEKDIVEEVAVELSSRVEAAVQSGVHRYNIILDPGFGF 595
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 7.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -1
Query: 346 RMKRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHT-QTAHT-DETYKKFLYNEISKYL 173
R+ R++ + K+ Q + L SV T T++ D YK + NE+ + L
Sbjct: 100 RLVRVDHVASYKVPQKEKEPANLVPLGESGSSLSVSTINTSNLPDHDYKTIIQNEVEQTL 159
Query: 172 SP-DSNSLI 149
SP D L+
Sbjct: 160 SPKDEKDLL 168
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.0
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = -1
Query: 445 KIMELKNSNVTSSLSKDPNLPSI-GEYSIAYLEARM--KRMEDILLNKIDQNSQRIVELK 275
+I KNS S+L+ L SI +Y + EA + ++ +NK+ Q++ E +
Sbjct: 313 QIANKKNSEEFSTLNLQ--LESITSQYLFSSKEAEIVFRKSRIEFMNKLKALQQKL-ENE 369
Query: 274 NTVVRSKKKSVHTQTAHTDETYKKFLYNEISKYLSPDSNS 155
V KK + + TD++ K N S +SP +++
Sbjct: 370 RIVEEIKKNGIQEDSQSTDDSSKDDDNNSESNDMSPHNDA 409
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 385 PSIGEYSI--AYLEARMKRMEDILLNKIDQNSQRIVELKNTVVRSKK 251
PS EY + +Y+E M+++ D+L K D+ + +L+ V+ K
Sbjct: 122 PSTTEYEVKVSYMEIYMEKIHDLLSEKNDRLTVHEDKLQGVYVQGLK 168
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/76 (22%), Positives = 32/76 (42%)
Frame = -1
Query: 370 YSIAYLEARMKRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFLYN 191
+S LE +I+ NKI ++E + + ++ T+ E K + N
Sbjct: 446 FSYEDLEHEFGITANIIANKIKYLENELLEREKRTLSKQELDGITKVFRHFEKKKSNMLN 505
Query: 190 EISKYLSPDSNSLIYE 143
E+ Y + S L+Y+
Sbjct: 506 EVEFYAALASLGLVYD 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,501
Number of Sequences: 5004
Number of extensions: 41776
Number of successful extensions: 115
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -