Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_J10
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 31 1.0
12_02_0534 - 20103908-20105897,20106314-20107116 29 2.4
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 29 3.1
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 29 3.1
11_01_0470 + 3645010-3647686,3647804-3648168 29 4.1
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105... 28 7.2
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 27 9.6
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 27 9.6
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 27 9.6
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -1
Query: 352 EARMKRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFLYNEISK-Y 176
E K +ED L + + Q + +E +NT+VR+K K H + + ++F +++I K +
Sbjct: 440 EQHSKLVEDTL-SVVTQKLRETME-ENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIH 497
Query: 175 LSPDSNSLIYEELFISKYAQ 116
+ + + +E+L + A+
Sbjct: 498 KATEEKEIKFEKLLQEERAK 517
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = -1
Query: 472 TNLENIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLE---ARMKRMEDILLNKIDQ 302
T+L+ I + EL N ++ +S+D G+ + + E ++ D++L I+Q
Sbjct: 455 TSLQEIGESYFNELINRSLIQPMSEDNFWDEDGKVHVFWDEDGKVHACKVHDMVLELINQ 514
Query: 301 NSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFLYNEISKYLSPDS 161
S + + ++ HT TA + + L+N Y SP++
Sbjct: 515 LSVEEDFVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEA 561
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 472 TNLENIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLE 350
TNL+N+ L NSN+T L P+L + S YLE
Sbjct: 246 TNLKNLTKLAEFHLANSNLTGPL---PDLTGMSSLSFVYLE 283
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -1
Query: 451 NTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQNSQRIVELK 275
N K + S+V +S + + SIA ++ MK+ D LL+ ++ S R+ +L+
Sbjct: 108 NLKSAGMLESHVLKKVSHEEERGNFSAVSIADIDRTMKKYADNLLHALESVSSRLSQLE 166
>11_01_0470 + 3645010-3647686,3647804-3648168
Length = 1013
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 472 TNLENIKNTKIMELKNSNVTSSL 404
T L NIK K+++L N+N+T S+
Sbjct: 553 TTLGNIKTLKVLKLSNNNLTGSI 575
>09_01_0073 -
1057560-1058043,1058199-1058385,1058754-1059062,
1059427-1060269,1061572-1062552,1063189-1063516
Length = 1043
Score = 27.9 bits (59), Expect = 7.2
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Frame = -1
Query: 469 NLENIKNTKIMELKNSNVTSSL--SKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQNS 296
N E +K +N+ S++ ++DP L Y+ E R+K +E + L +
Sbjct: 385 NYEELKRAGSNPHNFANIVSNIIIAEDPELG----YTTLQNE-RLKEIEKLTLTSWKEIV 439
Query: 295 QRIVELKNTVVRSKK--KSVHTQTAHTDETY---KKFLYNEIS-KYLSPDSNSLIYEELF 134
I + K V K +H Q AH E Y K++ +EI+ + LS S+ +I F
Sbjct: 440 HTIDDNKAEVSTDMSGIKKIHNQLAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRF 499
Query: 133 ISKYAQ 116
+ + Q
Sbjct: 500 LQQSVQ 505
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 27.5 bits (58), Expect = 9.6
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Frame = -1
Query: 469 NLENIKNTKIMELKNSNVTSSL--SKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQNS 296
N E +K N+ S++ ++DP L Y+ E R+K +E + L +
Sbjct: 385 NYEELKRAGSNPHNFENIVSNIIIAEDPELG----YTTLQNE-RLKEIEKLTLTSWKEIV 439
Query: 295 QRIVELKNTVVRSKK--KSVHTQTAHTDETY---KKFLYNEIS-KYLSPDSNSLIYEELF 134
I + K V K +H Q AH E Y K++ +EI+ + LS S+ +I F
Sbjct: 440 HTIDDNKAEVSTDMSGIKKIHNQLAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRF 499
Query: 133 ISKYAQ 116
+ + Q
Sbjct: 500 LQQSVQ 505
>07_01_0025 -
172742-173260,174559-174621,174701-174763,174852-174950,
175792-175818,175946-176251
Length = 358
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 385 PSIGEYS-IAYLEARMKRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETY 209
P GE + + R ++++ +N +D +S V N + KK VH++T + +
Sbjct: 149 PEHGEIDGVLSVVLRKMIVQEVKMNLVDTSS---VNFHNPI--DKKSKVHSKTEPSYSRF 203
Query: 208 KKFLYNEISKYLSPDSNSLI 149
++ + LSPD +I
Sbjct: 204 STKYFSTVLSSLSPDQKRII 223
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/49 (22%), Positives = 22/49 (44%)
Frame = +1
Query: 151 LSCCYRGSGILIFHCRGTSCKFRQCELFEYGLIFFLNAQLYFLVQQFVE 297
L+C GS +++ C + C + ++ L + YF Q +V+
Sbjct: 86 LTCTINGSSLVMIWCCHLANNSANCYFLHFTIVQHLKKKFYFHFQDYVD 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,083
Number of Sequences: 37544
Number of extensions: 202800
Number of successful extensions: 478
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -